Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00564 ATGGCTTTCGTCTCCACCTTCGTCTCCGGCGAGCTGTCGCTCCTCCTCGCCAGAGCCTCCGCTGTCGTCTCCTCCGTCAAGCATCCTTATCAACTTCCTTTGCCTAATTTGCGCTTCTCCCGCACCATTACCTTCGCTTCCGCCTCCAACCAGGCCACTGCGTCCTCCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGGATTTCGCCGGAGATGCAGGCGCTTGTTGGTGCTCCCGAGATTTCTCGTACCCAAGCCCTTAAGGTTATTTGGGCTCACATTAAAGAACATAATCTTCAGAAACCTAGCGACAAGAAAATCATAATGTGCGACGAGAAGCTGAAGAAAATATTCGGAGGGAAAGATGAAGTCGGGTTTCTGGAGATTGCTGGGCTAATAAGTTCCCACTTTCTATGA 417 52.76 MAFVSTFVSGELSLLLARASAVVSSVKHPYQLPLPNLRFSRTITFASASNQATASSRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKIIMCDEKLKKIFGGKDEVGFLEIAGLISSHFL 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6390924 6393241 - CmaCh19G005640.1 Cma19g00564 315252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00564 138 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 13 138 - -
Cma19g00564 138 CDD SWIB-MDM2_like 66 137 - -
Cma19g00564 138 Pfam SWIB/MDM2 domain 64 137 IPR003121 -
Cma19g00564 138 PANTHER EXPRESSED PROTEIN-RELATED 13 138 - -
Cma19g00564 138 ProSiteProfiles SWIB/MDM2 domain profile. 61 138 IPR003121 -
Cma19g00564 138 Gene3D SWIB/MDM2 domain 55 138 IPR036885 -
Cma19g00564 138 SUPERFAMILY SWIB/MDM2 domain 55 137 IPR036885 -
Cma19g00564 138 SMART swib_2 62 138 IPR019835 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00564 - - - cmo:103495293 201.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01711 Cma19g00564 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01965 Cma-Chr14:13826373 Cma19g00564 Cma-Chr19:6390924 4.31E-24 dispersed
Cma19g00564 Cma-Chr19:6390924 Cma20g01124 Cma-Chr20:8878787 2.84E-13 dispersed
Cma11g01711 Cma-Chr11:11321973 Cma19g00564 Cma-Chr19:6390924 1.20E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g668 Blo02g00939 Blo03g00081 . . Bpe07g00266 . . Bma12g00272 . Cmo11g01405 . . . . . Cpe04g00313 Cpe15g00452 . . . . . . . . . . . . . . Cone12ag1057 Cone8ag1091 . . . Csa07g00700 . Cme01g00106 . . . . . Bpe05g00483 . . . . . Cma11g01711 Cma19g00564 Car11g01130 Car19g00424 . . . . . . . . . . . . . . . . . . Chy01g00116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007982 0 1 2 2 2 1 2 1 1 1 0 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 0 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36894 PF02201 SWIB 8.20E-28 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00564 Cma_Chr19 FPKM 12.926388 11.134125 19.435507 21.44875 107.499069 95.668747 105.584267 28.332714 29.221445 29.759443