Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00567 | ATGGACCCGCCGGAGTGCCAGAAGCCTTCCGTCCGAACGTCGAAGAAGCGCAAGTCGGAGGAAGACTTGCAACTGGCCACTGCCAACAAGAGAGCCGTGCTTGACGAGATCACCAACTCGTTGATCTTCAGTTCGAATCAGTGCTCTCTTTCTGATCAGGAGATGACGGATAAGCATCTGGACGAGGAGAAACTTCCTGAAGGAAGGTCTGTTGATTGTTCTAAGAAGTCTGGCTCTGCTTATAGGATTTATAACCAACTCCGATTACTGGAGATGGAATTACACATGAAGGTACTGCCAAACATTGGAAAGGCTCACAACGGTCACTCCAGTGTAACGTTCCCTCGTTTCCGAGAAATTCTAGTCGATTGGTTAATAGACGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTCTATCTCACTGTATCACACATTGACAGATACTTATCCTGGCATGCTGTTGACAGAAACAAGCTACAACTTCTTGGTGTTTGTTGCATGCTAATTGCATCGAAGTATGAAGAGATCAATCCTCCTCACGTTGAAGACTTCTGCTATATAACTGATAATGCGTATACCATTGAACAGGCATTGAATATGGAGAGAGATGTACGCAAATTCTTGACCTTTGAAGGTGCCCCCACGACAAAAAATTTTCTCAGAATATTTACACAAGTTTCCTTGGAAAATTGGAAGGCTCCAGACTTGGAATTTGAGTTCTTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGTTCAATTCTTACCTTCAAAGATCGCTGCATCAGCCATTTTTCTTTCGAGAATGACAATCAAACCACAGAACCATCCTTGGTGTTTTGCACTACAACTTTGCTCCGGTTACAGGCCATCTGAATTGAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAAAAAGCTCTTTACTAGCTTTAAGAGACAAGTACAAGCAGCATAAGTTCATGTGTGTGGCAGAGCTATCGTCTCCCCCAGAAATTCCTGCACATTATTTCGAGGACATTTATCAGCAATTATTCAACAGGTTCATAAGAACTTAA | 1083 | 42.47 | MDPPECQKPSVRTSKKRKSEEDLQLATANKRAVLDEITNSLIFSSNQCSLSDQEMTDKHLDEEKLPEGRSVDCSKKSGSAYRIYNQLRLLEMELHMKVLPNIGKAHNGHSSVTFPRFREILVDWLIDVAEEYKLVSDTLYLTVSHIDRYLSWHAVDRNKLQLLGVCCMLIASKYEEINPPHVEDFCYITDNAYTIEQALNMERDVRKFLTFEGAPTTKNFLRIFTQVSLENWKAPDLEFEFLSCYLAELSLLDHRFVQFLPSKIAASAIFLSRMTIKPQNHPWCFALQLCSGYRPSELKECILAIHDLQLNRKKSSLLALRDKYKQHKFMCVAELSSPPEIPAHYFEDIYQQLFNRFIRT | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 6402662 | 6406814 | + | CmaCh19G005670.1 | Cma19g00567 | 315255 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00567 | 360 | Pfam | Cyclin, N-terminal domain | 108 | 211 | IPR006671 | - | |
Cma19g00567 | 360 | SUPERFAMILY | Cyclin-like | 89 | 211 | IPR036915 | - | |
Cma19g00567 | 360 | PIRSF | Cyclin_A_B_D_E | 2 | 350 | IPR039361 | - | |
Cma19g00567 | 360 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
Cma19g00567 | 360 | SUPERFAMILY | Cyclin-like | 215 | 339 | IPR036915 | - | |
Cma19g00567 | 360 | SMART | Cyclin_C_2 | 215 | 338 | IPR004367 | - | |
Cma19g00567 | 360 | Gene3D | - | 111 | 213 | - | - | |
Cma19g00567 | 360 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cma19g00567 | 360 | CDD | CYCLIN | 215 | 306 | IPR013763 | - | |
Cma19g00567 | 360 | Pfam | Cyclin, C-terminal domain | 215 | 337 | IPR004367 | - | |
Cma19g00567 | 360 | PANTHER | CYCLIN-A3-1-LIKE | 29 | 348 | - | - | |
Cma19g00567 | 360 | PANTHER | CYCLINS | 29 | 348 | IPR039361 | - | |
Cma19g00567 | 360 | CDD | CYCLIN | 118 | 205 | IPR013763 | - | |
Cma19g00567 | 360 | SMART | cyclin_7 | 219 | 307 | IPR013763 | - | |
Cma19g00567 | 360 | SMART | cyclin_7 | 123 | 207 | IPR013763 | - | |
Cma19g00567 | 360 | Gene3D | - | 214 | 334 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01716 | Cma19g00567 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma19g00567 | Cma-Chr19:6402662 | Cma17g00828 | Cma-Chr17:6501508 | 1.29E-79 | dispersed | |
Cma01g01803 | Cma-Chr1:12023071 | Cma19g00567 | Cma-Chr19:6402662 | 1.16E-100 | wgd | |
Cma11g01716 | Cma-Chr11:11366810 | Cma19g00567 | Cma-Chr19:6402662 | 0 | wgd | |
Cma12g00577 | Cma-Chr12:3019501 | Cma19g00567 | Cma-Chr19:6402662 | 2.37E-99 | wgd | |
Cma19g00567 | Cma-Chr19:6402662 | Cma05g00158 | Cma-Chr5:686175 | 6.82E-103 | wgd | |
Cma19g00567 | Cma-Chr19:6402662 | Cma09g00270 | Cma-Chr9:1114199 | 1.16E-95 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00567 | K06627 | - | csv:101213896 | 545.043 |