Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00567 ATGGACCCGCCGGAGTGCCAGAAGCCTTCCGTCCGAACGTCGAAGAAGCGCAAGTCGGAGGAAGACTTGCAACTGGCCACTGCCAACAAGAGAGCCGTGCTTGACGAGATCACCAACTCGTTGATCTTCAGTTCGAATCAGTGCTCTCTTTCTGATCAGGAGATGACGGATAAGCATCTGGACGAGGAGAAACTTCCTGAAGGAAGGTCTGTTGATTGTTCTAAGAAGTCTGGCTCTGCTTATAGGATTTATAACCAACTCCGATTACTGGAGATGGAATTACACATGAAGGTACTGCCAAACATTGGAAAGGCTCACAACGGTCACTCCAGTGTAACGTTCCCTCGTTTCCGAGAAATTCTAGTCGATTGGTTAATAGACGTTGCTGAGGAATACAAGCTTGTATCAGACACCCTCTATCTCACTGTATCACACATTGACAGATACTTATCCTGGCATGCTGTTGACAGAAACAAGCTACAACTTCTTGGTGTTTGTTGCATGCTAATTGCATCGAAGTATGAAGAGATCAATCCTCCTCACGTTGAAGACTTCTGCTATATAACTGATAATGCGTATACCATTGAACAGGCATTGAATATGGAGAGAGATGTACGCAAATTCTTGACCTTTGAAGGTGCCCCCACGACAAAAAATTTTCTCAGAATATTTACACAAGTTTCCTTGGAAAATTGGAAGGCTCCAGACTTGGAATTTGAGTTCTTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATCACCGTTTTGTTCAATTCTTACCTTCAAAGATCGCTGCATCAGCCATTTTTCTTTCGAGAATGACAATCAAACCACAGAACCATCCTTGGTGTTTTGCACTACAACTTTGCTCCGGTTACAGGCCATCTGAATTGAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAAAAAGCTCTTTACTAGCTTTAAGAGACAAGTACAAGCAGCATAAGTTCATGTGTGTGGCAGAGCTATCGTCTCCCCCAGAAATTCCTGCACATTATTTCGAGGACATTTATCAGCAATTATTCAACAGGTTCATAAGAACTTAA 1083 42.47 MDPPECQKPSVRTSKKRKSEEDLQLATANKRAVLDEITNSLIFSSNQCSLSDQEMTDKHLDEEKLPEGRSVDCSKKSGSAYRIYNQLRLLEMELHMKVLPNIGKAHNGHSSVTFPRFREILVDWLIDVAEEYKLVSDTLYLTVSHIDRYLSWHAVDRNKLQLLGVCCMLIASKYEEINPPHVEDFCYITDNAYTIEQALNMERDVRKFLTFEGAPTTKNFLRIFTQVSLENWKAPDLEFEFLSCYLAELSLLDHRFVQFLPSKIAASAIFLSRMTIKPQNHPWCFALQLCSGYRPSELKECILAIHDLQLNRKKSSLLALRDKYKQHKFMCVAELSSPPEIPAHYFEDIYQQLFNRFIRT 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6402662 6406814 + CmaCh19G005670.1 Cma19g00567 315255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00567 360 Pfam Cyclin, N-terminal domain 108 211 IPR006671 -
Cma19g00567 360 SUPERFAMILY Cyclin-like 89 211 IPR036915 -
Cma19g00567 360 PIRSF Cyclin_A_B_D_E 2 350 IPR039361 -
Cma19g00567 360 MobiDBLite consensus disorder prediction 9 23 - -
Cma19g00567 360 SUPERFAMILY Cyclin-like 215 339 IPR036915 -
Cma19g00567 360 SMART Cyclin_C_2 215 338 IPR004367 -
Cma19g00567 360 Gene3D - 111 213 - -
Cma19g00567 360 MobiDBLite consensus disorder prediction 1 23 - -
Cma19g00567 360 CDD CYCLIN 215 306 IPR013763 -
Cma19g00567 360 Pfam Cyclin, C-terminal domain 215 337 IPR004367 -
Cma19g00567 360 PANTHER CYCLIN-A3-1-LIKE 29 348 - -
Cma19g00567 360 PANTHER CYCLINS 29 348 IPR039361 -
Cma19g00567 360 CDD CYCLIN 118 205 IPR013763 -
Cma19g00567 360 SMART cyclin_7 219 307 IPR013763 -
Cma19g00567 360 SMART cyclin_7 123 207 IPR013763 -
Cma19g00567 360 Gene3D - 214 334 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01716 Cma19g00567 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00567 Cma-Chr19:6402662 Cma17g00828 Cma-Chr17:6501508 1.29E-79 dispersed
Cma01g01803 Cma-Chr1:12023071 Cma19g00567 Cma-Chr19:6402662 1.16E-100 wgd
Cma11g01716 Cma-Chr11:11366810 Cma19g00567 Cma-Chr19:6402662 0 wgd
Cma12g00577 Cma-Chr12:3019501 Cma19g00567 Cma-Chr19:6402662 2.37E-99 wgd
Cma19g00567 Cma-Chr19:6402662 Cma05g00158 Cma-Chr5:686175 6.82E-103 wgd
Cma19g00567 Cma-Chr19:6402662 Cma09g00270 Cma-Chr9:1114199 1.16E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00567 K06627 - csv:101213896 545.043