Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00572 ATGAATTCTGGTTCGTCTCGCTCGGCTAATTCCTCCGCCCAGAGATCCAAGCGAATTCTCGACAATTCTTCTCCGTCGAGCCCTTCCAGTAGCGGTGCCAACAAGAAGAAACGGATCGACCAGAAAACCCTAGGCGTCGCATGGGGAGCCAATTCCAGTTCTTCCTCTCGCTCCTCTCGCAAATCGCCCTTTCCAGATTTCGGAAGCTATATGGTAGAAAAGAACAGAAAACTGCACAATCAGTTTAACGTTGACGCTTCAAGTGCTTCACATAGTGGTACGAACTCCGCAAATCAAATATTTCAGGGCGTTTCTATATTTGTCGACGGTTTCACGATTCCTTCAAGTCAGGAATTGCGGGGTTATATGTTGAAGTATGGTGGCAGATTTGAGAATTATTTTTCAAGACGTAGTGTTTCTCATATAATTTGCAGCAATTTACCGGATAGTAAAGTAAAGAATCTCAGGTCCTTCAGCCGTGGACTTCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGTTGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGATTATCAGCATTCTTTTCTATGAAAAAAGGTCCGATGTTGGAGAAACGCAAAATGTGCATGACTACTGAAAATAAATATGGAACAGAGGATTCAATGTCCCTGGTGGCTGTGAATTTAAAGGATTCACGGTCTGAAGTGAATGAATTGATAGAATCTAGAGTAGAGATGCATTCCGACTCTGAAATGAATCTTCAAGATAATGCAGATACTGAACTGAATGAGAAGCCAAGTGATGATTTAAAGGCTGGCGAATTAAAGGATACAAGTATATCTGATGTAGATGAATCTATTGAATATGTACCACAAATCTGTGAAAGTTTTGAGATGCTTCCTCGAAAGAATGCTGATGTAGAAGTAAAGAAAGAGCCAAGCAATGAAAAATGTAATTATGCAGATGAAGAACCAGGAATTGTTGATGCGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTGTCTAAGTCAACTCACAATGATAGCACCAATAATTATCATAGCGATGGATCATCAAGTTCTTTGGTGGCTGGGTCTTCTAAGCTGCGGCATTCAAATTTTGGGAAGGCAGATTTTGTGGAAAGTTATTTCAAGAAGTCTAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTACTATAAGCGTTTTCCACGATCAGCTAGTGGGTCCAATTCCGTAACTTCTCATATCAGTGGTTCTTCCCATTATCAGTCTGCCACTATTATCCACGTTGACATGGACTGTTTTTTTGTCTCAGTGGTTATTCGAAACAGTCCACAATTTAAGGATAAACCTGTAGCTGTGTGCCACTCCGATAATCCGAAAGGAACTGCAGAAATATCATCTGCAAACTACCCAGCTCGAGGTTATGGAGTCAGAGCGGGAATGTTTGTTAGAGATGCGAAAGCTCTTTGTCCCCAACTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTACGACATATTGCATAAGCACTGTGAGAAAGTGCAGGCTGTAAGTTGTGATGAAGCATTTTTGGATATCTCAGGCACAGACAAGGTAGATCCTGAGGTTTTGGCTTCAAAAATAAGAAAAGAAATTTTTGATACAACTGGATGTACTGCAAGTGCTGGAATATCTACAAATATGTTAATGGCTCGCCTTGCTACCAGAACTGCAAAACCTGATGGTCAGTGTTACATTCCTTCGGAGAAGGGTGATGATTATTTAGATCCGCTTCCCATTAAGGATCTTCCCGGAATAGGGCGTGCCTTGGAGGAGAAGTTGAAGAAAAGAAGTGTATTTACTTGTGGTCAGCTGCGTATGATATCCAAGGATTCTCTTCAGAAAGACTTTGGATTGAAAACAGGGGAGATGCTATGGAATTATAGTCGGGGGGTGGACAATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAATTGGGGTGTTCGGTTCAAGGACTTTAAAGATTGTCAATGCTTTCTCTCGAACCTTTGTAAGGAGGTTTCATTACGATTGCATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGAAGGAAAGATGCCGATGAACCGACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCACTCGTTGACGGTTCCTGATGCCACTGATGACCTGGAAATTCTTCAGAGGATTGCAAAGCAGCTTTTTGGGTTTTTTGTCATAGATGTCAAAGAAATTCGTGGTATTGGTTTACAAGTTTCGAAGCTTCAAAATGTGGATATCTCTAAGCAAGGGATGAAAAGAAATTCTTTGGACGCATGGCTTCATTCGTCTGGAACGACAAATGTGGAAAATAGTACTGGTCCTTTGGTAAAGGAAAGGGCTAATATAGATAGTGAGAAACAGTGTGACTCTGGAGCTTTAGTTCAGTTATCTGCTGATCCTACAAGCCATCTGATTCAGATGGAGAATAACCAGCTCCACTGTGAATCTTTGAACCCTGTTACTGCTCCACCTCTGTGCAATCTGGATATTGGAGTTATAGGGAGCCTACCTCCTGAACTCTTTTCAGAGTTAAATGAAATCTATGGTGGAAAACTAGATGATCTCCTAGCTAAAAGCAGATATAAAAGTGAAGCTTTCTCGTCTTCTTTAAGGGTTTCGTCTCTAGGACCAGGAGAAGGTGATAGACTTACTATATCAGATGTCCAAGAAAACAAAACACAGTTGGAAAATAAGCACATTGTTGAACGTTCCCCACCTGCACAGATTTCTGGGGAAGGATTGTGCAATGTGGTGACTCCTATACCTGCCTCTGGATCTCATAGAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCGTCAGTATTACAAGAGCTACCTGAACCACTGAGGGATGACATACTTAAGCAACTCCCAGCACACAGGGGAAAAGAGCTTTCTCTAGAACATTCAGTAAAAATTCATCACGAATCTTGTGATGCCACTGCCAGTACGTCTGGCTCAATAGACTCTTTCACGGAGAATGGTCTTTGGTCTGGGAACCCTCCTCTATGGGTTGATAAGTTTAAAGCCAGTAATTGCTTGATATTACAATTTCTTGCAGAGACGTATACAGAATCGGGGTCACCCAAAAATCTGTATGGGATTTTGCTGAGGACTTTATCTAAATCTTGGCATCCTCCAGTTCCGGAATCTGATGGTTGGGATGGTGCTATTTATGGTTTATGTGAACTTCTTAAGCAGTACTTTAAGTTAAAGATAGAGTTGGACATCGAGGAGACCTATGCTTGTTTTCGTCTTCTTAAGAGGTTAGCGATGAAATCCCAGGTTTTTCTGGAAGTCTTCAACATTATCAATCCTTACCTTCAGGGAGCGGTCAATGAATTCTACGGCGGAAGTTTGAAGGGTTAA 3516 41.52 MNSGSSRSANSSAQRSKRILDNSSPSSPSSSGANKKKRIDQKTLGVAWGANSSSSSRSSRKSPFPDFGSYMVEKNRKLHNQFNVDASSASHSGTNSANQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRSVSHIICSNLPDSKVKNLRSFSRGLPVVKPTWILDSVASNKLLSWVPYQLDQLVSNQPRLSAFFSMKKGPMLEKRKMCMTTENKYGTEDSMSLVAVNLKDSRSEVNELIESRVEMHSDSEMNLQDNADTELNEKPSDDLKAGELKDTSISDVDESIEYVPQICESFEMLPRKNADVEVKKEPSNEKCNYADEEPGIVDAGQSSEENISSLHGLSKSTHNDSTNNYHSDGSSSSLVAGSSKLRHSNFGKADFVESYFKKSRLHFIGTWRNRYYKRFPRSASGSNSVTSHISGSSHYQSATIIHVDMDCFFVSVVIRNSPQFKDKPVAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPQLVIFPYDFKSYEEVADQFYDILHKHCEKVQAVSCDEAFLDISGTDKVDPEVLASKIRKEIFDTTGCTASAGISTNMLMARLATRTAKPDGQCYIPSEKGDDYLDPLPIKDLPGIGRALEEKLKKRSVFTCGQLRMISKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLSNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTVPDATDDLEILQRIAKQLFGFFVIDVKEIRGIGLQVSKLQNVDISKQGMKRNSLDAWLHSSGTTNVENSTGPLVKERANIDSEKQCDSGALVQLSADPTSHLIQMENNQLHCESLNPVTAPPLCNLDIGVIGSLPPELFSELNEIYGGKLDDLLAKSRYKSEAFSSSLRVSSLGPGEGDRLTISDVQENKTQLENKHIVERSPPAQISGEGLCNVVTPIPASGSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGKELSLEHSVKIHHESCDATASTSGSIDSFTENGLWSGNPPLWVDKFKASNCLILQFLAETYTESGSPKNLYGILLRTLSKSWHPPVPESDGWDGAIYGLCELLKQYFKLKIELDIEETYACFRLLKRLAMKSQVFLEVFNIINPYLQGAVNEFYGGSLKG 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6422989 6435857 - CmaCh19G005720.1 Cma19g00572 315260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00572 1171 SUPERFAMILY DNA/RNA polymerases 433 668 IPR043502 -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 46 63 - -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 267 284 - -
Cma19g00572 1171 Gene3D - 387 421 - -
Cma19g00572 1171 Gene3D - 437 597 IPR043128 -
Cma19g00572 1171 PANTHER DNA REPAIR PROTEIN REV1 35 1167 - -
Cma19g00572 1171 Pfam impB/mucB/samB family C-terminal domain 674 795 IPR017961 GO:0003684|GO:0006281
Cma19g00572 1171 Gene3D - 609 663 - -
Cma19g00572 1171 Pfam BRCT domain, a BRCA1 C-terminus domain 98 185 IPR001357 -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 1 66 - -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 311 333 - -
Cma19g00572 1171 PIRSF REV1 50 1165 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Cma19g00572 1171 SMART BRCT_7 98 177 IPR001357 -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 348 371 - -
Cma19g00572 1171 CDD BRCT_Rev1 100 187 - -
Cma19g00572 1171 Gene3D - 454 508 - -
Cma19g00572 1171 Gene3D - 673 796 IPR036775 GO:0003684|GO:0006281
Cma19g00572 1171 ProSiteProfiles UmuC domain profile. 437 618 IPR001126 GO:0006281
Cma19g00572 1171 Gene3D BRCT domain 90 187 IPR036420 -
Cma19g00572 1171 ProSiteProfiles BRCT domain profile. 96 187 IPR001357 -
Cma19g00572 1171 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 673 786 IPR036775 GO:0003684|GO:0006281
Cma19g00572 1171 MobiDBLite consensus disorder prediction 254 284 - -
Cma19g00572 1171 Pfam impB/mucB/samB family 440 586 IPR001126 GO:0006281
Cma19g00572 1171 Pfam IMS family HHH motif 602 627 IPR024728 -
Cma19g00572 1171 CDD PolY_Rev1 388 788 - -
Cma19g00572 1171 SUPERFAMILY BRCT domain 64 189 IPR036420 -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 311 329 - -
Cma19g00572 1171 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00572 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 1922.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00015 Cma-Chr7:99156 Cma19g00572 Cma-Chr19:6422989 8.77E-18 dispersed
Cma19g00550 Cma-Chr19:6287364 Cma19g00572 Cma-Chr19:6422989 8.01E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00572 Cma_Chr19 FPKM 1.799289 1.841779 2.495463 2.870428 4.445703 3.658263 4.193866 2.128355 2.029417 2.300045