Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00573 ATGGCTTCCAACAAGATCATCTTCTTCCTTTTTTCCTCTCTCTTCCTCCTGCAGGCTGTTTCTGCCGTTGAGTACATCGTCACGAACGACGCGATCGGAACTCCTGGCGGTATCCGCTTCGACAACGAAATCGGAGCAGATTACAGCCGGCAGATATTGGCAGCTGCCACTGATTTTATTTGGACCATTTTCCGGCAAAGCTCCGATGCTGATCGGAAGAATGTGCAGAAGGTCAGCCTGTTCATCGATAGAGACTATGATGGAGTGGCGTTTGCTAGCAACGACGAGATTCATGTCGGTGCAGACTATATTGCTAACTATGGCGGAGACTTGAAGAAGGAAATAACAGGAGTGCTATACCACGAAATGACCCATATTTGGCAATGGAATGGGAACCCAAGTTCACCGGGCGGGCTGATCGAAGGGATCGCGGACTACGTACGGCTGAAGTCGGGGTATATTCCGGGGCACTGGGTGGGGCCGGGCGGCGGGAGTAGGTGGGACCAAGGCTACGACGTGACGGCGAGATTTTTGGACTATTTAGAGGGGCTGAGAAGTGGGTTCGTTGCAGAGCTGAACCGGTGGCTCAAAAATGGCTACTCCGCCGATTACTTCCTGCAGTTGCTCGGAAAGCCGGTGGATCAGCTCTGGGCAGATTACAAGGCGGCGTTCCGAAATTAG 681 52.72 MASNKIIFFLFSSLFLLQAVSAVEYIVTNDAIGTPGGIRFDNEIGADYSRQILAAATDFIWTIFRQSSDADRKNVQKVSLFIDRDYDGVAFASNDEIHVGADYIANYGGDLKKEITGVLYHEMTHIWQWNGNPSSPGGLIEGIADYVRLKSGYIPGHWVGPGGGSRWDQGYDVTARFLDYLEGLRSGFVAELNRWLKNGYSADYFLQLLGKPVDQLWADYKAAFRN 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6436540 6438097 - CmaCh19G005730.1 Cma19g00573 315261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00573 226 PANTHER - 2 224 IPR007541 -
Cma19g00573 226 PANTHER PLANT BASIC SECRETORY PROTEIN (BSP) FAMILY PROTEIN 2 224 - -
Cma19g00573 226 Pfam Peptidase of plants and bacteria 26 220 IPR007541 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00573 - - - csv:101221124 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00573 Cma-Chr19:6436540 Cma19g01077 Cma-Chr19:8996347 4.45E-09 dispersed
Cma19g00573 Cma-Chr19:6436540 Cma19g00575 Cma-Chr19:6443561 1.21E-115 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g644 . . . . . . . . Cmo19g00588 . . . . . . . Cpe15g00459 . . . . . . . Cla02g00648 Cam02g0681 Cec02g0694 Cco02g0714 Clacu02g0689 Cmu02g0684 Cre02g1003 . . . . Lsi03g00545 . . . . . . Bda14g01462 . . Bma03g01372 . . . . . Cma19g00573 . Car19g00433 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001757 1 4 2 2 2 3 2 3 3 4 2 3 2 2 3 1 3 2 2 3 3 1 2 1 2 3 2 1 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00573 Cma_Chr19 FPKM 3.780078 4.307237 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0