Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00580 ATGCAGTCGCTACTCTCGCCGGTCGGTCGCGGCGGTCCCTTCCCGTCCGCCGCAGTTTATACATCGGAGTTACACCTCAGCTGTTTCAATCGTCGACCTTTCTCTGTCCGATACGCATCCAATCTCAAATCACCTCATAATTCCCTCCCTTCATTTAGTGCAATTCGACCTCCTTCTTCTTTTTCGTTGTTGCTTTTGAAAATTTTTGGTGCTCTGGAGCATAGAAGAGGACAGTTTTGCTCGGATACACGCGCTTCTTCTAGTCCCATTTCGCCGACGGTTCCCCCAAACGATGAGGCTGAAAAGGCAAAACTGGCTCAGGATCAAAGAAACTTTTGGGAATATGTGGAGATTGATTACTATGGGATACACAAAATTCTCAAGCTTTCATTGTCGAGGATAGATTGTCAAATTTCTTCTGTTGCTGGCTGGGTGATAGTCCCCATTGCTGCTGCTTTCCTCATCTTTATCATCATTCCTTACAAGTTTTCAACTTCTGTAAAGGTGGCAAAGAGATTAGAGAAGACATCAAGGTATTTCAAGAGGTTGGGTAATCTCGGATTTTGGGGACAGTTGGTGTGCACGATTGTCGCTGCTGTTATTCTTTCATTCTCTGTTGTCGTCACCGGGAAAATTACATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTCGGGTACATTCGGCTTTCTGATAAACTTCAACGGACTGCAAATCAACCTTCCAAGGCTCCTCCTCGGGCCGATGTCGTGAATAGCTTAAAAAATGGAATAGTAGTGAACCTACTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGACCGTAGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCAGCAATTCCATATTACCAGGGAGTCCCCCCTGGAAATAGCCCTGTTCTTGCTTTGGATGTATTCTTAGTACAGGCTTCTGCAAACACTATTCTCTCTCATTTCCTGGGGCTCGTTTTCTCATTGGAGCTACTGCGCTCGGGCCAGGGCGCTCTCTTTTCTGGTGTGGGTGGGAATCAAAAGCCGCTGTTGGTAGGGAACTTGAGTAGTTGCAGAGGAGAAAGAAGGACGTGCAATTTGAAGCTATTAGAGATGTTGCCTACAGCTTCCAGAGGGCGTTCTTCGGCCTCTACATCTCGAGCTAATTCCATGTATCCACAGTACCTCCGTCGAATTGTCAAGTGGCAACAAATGGACATCGAATATACATTCTGGCAAATGCTTCATCTATGCACTTCACCAAAAGTTGTGTACGTATTGGTTCTTATTGGCTATTGTCACTCACTAACAGCTGTAGCGTACTCTGTTTCAAGTTTGTTTTTGCCCTTTTTTAATCGTTGCTATTTGGACTTTTGGTGGAATTTTGCTTTGGATGCAGCTATCAGCATACCAAGTATCACAAGCGTAAAAACTAAGAATCAATGGGCACGTGATGATCCTGCTTTTGTTGTGATCTGCAGTCTTCTTTTGGCAATCGCAACTTTGGCTTACTGTGCTGCATATGATCATAGTGCAGCACATGCCACTTTTGTAGTTATTTCAGTACTGCTCTTCCATTTGCTAATAACTGGGGCGATTTTGGCTACTGGTTGTTGGTTATTAACAAATTCTTACCTTCGGGAAGAGACACCGGGCAGTCATGTAGTTGAGCAACGGGTTGAGTGGCTCTATGCATTTGATGTGCACTGCAATTCTTTCTTCCCAATGTTTGTTTTGCTTTACGTGATCCATTATTTTATATCACCGCTTCTGGTGGCCCATGGCTTCATTCCGTTATTGCTATCAAATTTGCTTTTCATGATTGGGGCTTCGTATTACCACTACGTCAACTTTTTAGGTTATGATGTACTGCCATTTTTGGAGAAAACCACCGTCTTCCTCTATCCAATTGGCGTGGTCTTTGTCCTTACTCCAATCTTTATCCTGATTGGATTCAACCCTTCAAGATATTTCATGAATATGTACTTTAGTCAGAACTTATAA 2034 44.05 MQSLLSPVGRGGPFPSAAVYTSELHLSCFNRRPFSVRYASNLKSPHNSLPSFSAIRPPSSFSLLLLKIFGALEHRRGQFCSDTRASSSPISPTVPPNDEAEKAKLAQDQRNFWEYVEIDYYGIHKILKLSLSRIDCQISSVAGWVIVPIAAAFLIFIIIPYKFSTSVKVAKRLEKTSRYFKRLGNLGFWGQLVCTIVAAVILSFSVVVTGKITSPATFYATAGGIVAAFISVFWSFGYIRLSDKLQRTANQPSKAPPRADVVNSLKNGIVVNLLGMGAAILGMQATVGLLVAKALTSSAIPYYQGVPPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSGQGALFSGVGGNQKPLLVGNLSSCRGERRTCNLKLLEMLPTASRGRSSASTSRANSMYPQYLRRIVKWQQMDIEYTFWQMLHLCTSPKVVYVLVLIGYCHSLTAVAYSVSSLFLPFFNRCYLDFWWNFALDAAISIPSITSVKTKNQWARDDPAFVVICSLLLAIATLAYCAAYDHSAAHATFVVISVLLFHLLITGAILATGCWLLTNSYLREETPGSHVVEQRVEWLYAFDVHCNSFFPMFVLLYVIHYFISPLLVAHGFIPLLLSNLLFMIGASYYHYVNFLGYDVLPFLEKTTVFLYPIGVVFVLTPIFILIGFNPSRYFMNMYFSQNL 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6473219 6484982 - CmaCh19G005800.1 Cma19g00580 315268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00580 677 Pfam UNC-50 family 405 673 IPR007881 -
Cma19g00580 677 PANTHER PROTEIN UNC-50 HOMOLOG 382 436 IPR007881 -
Cma19g00580 677 PANTHER BNAA07G03880D PROTEIN 382 436 - -
Cma19g00580 677 PANTHER PROTEIN UNC-50 HOMOLOG 487 677 IPR007881 -
Cma19g00580 677 PANTHER BNAA07G03880D PROTEIN 487 677 - -
Cma19g00580 677 Pfam Protein of unknown function (DUF3611) 171 343 IPR022051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00580 - - - csv:101220418 451.055
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01724 Cma-Chr11:11433737 Cma19g00580 Cma-Chr19:6473219 7.77E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g625 Blo02g00844 . . Bda08g00755 . . Bma05g00530 . Cmo19g00595 Cmo11g01392 . . . . . Cpe04g00304 Cpe15g00467 . . . . . . . . . . . . . . . . Cone3ag1001 Cone10ag1020 Lsi03g00531 . . . . . . . . . . . . . . . Cma19g00580 Car11g01118 Car19g00441 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006089 2 1 2 3 3 0 2 1 1 1 1 0 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00580 Cma_Chr19 FPKM 13.504278 12.378721 20.411634 19.211926 22.12075 19.312283 22.560513 16.111395 17.567259 19.304647