Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00581 ATGGCGGCGACGACCGATCTAGGTCCGATCCAGACAAATGCGACTTCCAATCCACCTCCAAACAAGCAGATCTTCATCCTCTCCGGCCAGAGCAACATGGCCGGGCGAGGCGGCGTCTTAAAGAAGCTCCACCGGTGGGACGGCGTGGTTCCACCAGAAGCGCAGCCGCATCCGTCGATATTCCGTCTGAGCGCGAAGTTACATTGGGAGGTAGCGCATGAGCCACTGCACGCCGACATCGACTCGAAGAAGACGTGCGGAGTGGGGCCAGGAATGGCATTCGCGAACGGCGTGAGAGAGCGAGTAGGGACGGTGGCGCTGGTGCCGTGCGCTGTTGGAGGTACCGCCATCAGAGAGTGGGCGCGTGGAGAGAAGCTGTATGAGGATATGGTGAAGAGGGCGAGACATAGCGTGAAGGACGGCGGGGAAATTAGGGCAATTCTGTGGTTTCAAGGAGAGAGTGACACCTCTACTGAACATGATGCTGATGCGTACCAGGGGAATATGGAGGCGTTTGTTGCTAATGTGCGCCGGGATTTGGCCTTGCCTTCTCTCCCAATTATTCAGGTAGCACTGGCATCAGGAATCAAGTATATTGAAAAAGTGAGGGAGGCTCAATTGGGAATGAGAGTGGAGAATGTGGTGTGTGTGGATGCAAAGGGATTGGAACTTAAAGAAGACAACCTCCATCTCACCACACAGGCTCAGGTCATTCTTGGTCAAATGCTGGCCGATGCCTACCTCACCCACTTCGCTCCACCACTCAAATCGAAGCCCTCGACCTAA 786 55.22 MAATTDLGPIQTNATSNPPPNKQIFILSGQSNMAGRGGVLKKLHRWDGVVPPEAQPHPSIFRLSAKLHWEVAHEPLHADIDSKKTCGVGPGMAFANGVRERVGTVALVPCAVGGTAIREWARGEKLYEDMVKRARHSVKDGGEIRAILWFQGESDTSTEHDADAYQGNMEAFVANVRRDLALPSLPIIQVALASGIKYIEKVREAQLGMRVENVVCVDAKGLELKEDNLHLTTQAQVILGQMLADAYLTHFAPPLKSKPST 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6485869 6487986 + CmaCh19G005810.1 Cma19g00581 315269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00581 261 Gene3D SGNH hydrolase 21 252 IPR036514 -
Cma19g00581 261 MobiDBLite consensus disorder prediction 1 22 - -
Cma19g00581 261 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 22 248 IPR005181 -
Cma19g00581 261 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 19 251 - -
Cma19g00581 261 PANTHER BNACNNG62850D PROTEIN 19 251 - -
Cma19g00581 261 SUPERFAMILY SGNH hydrolase 23 250 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00581 - - - bhj:120078124 462.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00581 Cma-Chr19:6485869 Cma15g00604 Cma-Chr15:2857022 2.10E-54 dispersed
Cma01g01811 Cma-Chr1:12042083 Cma19g00581 Cma-Chr19:6485869 5.43E-81 wgd
Cma12g00571 Cma-Chr12:2986209 Cma19g00581 Cma-Chr19:6485869 1.55E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g619 Blo02g00841 . . Bda08g00768 . . Bma05g00526 . Cmo19g00597 . . . . . . . Cpe15g00469 . . . . . . . Cla02g00633 Cam02g0666 . . Clacu02g0674 Cmu02g0668 . Cone12ag1073 . . . Lsi03g00529 . . . . . . . . . . . . . . . Cma19g00581 . Car19g00443 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00581 Cma_Chr19 FPKM 17.74119 15.714773 28.815773 28.258003 44.139046 48.510052 37.760166 5.282826 5.596115 5.103134