Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00582 ATGGAGTGTACTCGAAAAATGAAAAAGGTGAAACACGTGGCAGTCTGGCATTCCTCAAATAGCAAAATGCGGAAGAAAACGGCCATCGTCAACCGCTGGGATAAGGAATTTCAGGAAAGAGCTCAGGATTTCTCCGGCGTCAATCGAGATCTTAAAATGGCGGCTCTTCATGCTTCTGCCTCCCTCTCTCTCGTCGTACGCGATGCTTCCTTCGCAAGAAGAAGAGCACCAGAAGTCTTTCCTCTCCACAGAGGCTCCCTACCGAATCTATACCGACTTGGAACGACGTTTGCTACTGGCTCTCCACTCGTGTTAAGCAAGCCAACTGGTCAAAAGAAGCATACAGTGAAACCAAATTCTGTTTCTATACGATGTAAGCAAAGTAGCCAAGAGAGTAACATTCTGGATGTTTGGCTTGGGCGGTTTGCGATGGTTGGATTTGCAATTGCAATTAGTGTTGAAATAGCAACAGGCAAGGGACTTTTAGAGAATTTTGGAGTAACGACTCCTCTGCCTAGTGTGGCCTTGGCAGTTACCGCACTGGTTGGCATACTGACAGCAGTTTTCATTTTCCAATCAGCTACCAAAAACTGA 594 46.3 MECTRKMKKVKHVAVWHSSNSKMRKKTAIVNRWDKEFQERAQDFSGVNRDLKMAALHASASLSLVVRDASFARRRAPEVFPLHRGSLPNLYRLGTTFATGSPLVLSKPTGQKKHTVKPNSVSIRCKQSSQESNILDVWLGRFAMVGFAIAISVEIATGKGLLENFGVTTPLPSVALAVTALVGILTAVFIFQSATKN 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6488919 6490749 + CmaCh19G005820.1 Cma19g00582 315270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00582 197 SUPERFAMILY Chlorophyll a-b binding protein 135 181 - -
Cma19g00582 197 PANTHER STRESS ENHANCED PROTEIN 1, CHLOROPLASTIC 85 197 - -
Cma19g00582 197 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 85 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00582 - - K07937 cmos:111455481 264.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01725 Cma19g00582 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01725 Cma-Chr11:11449349 Cma19g00582 Cma-Chr19:6488919 2.28E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g616 . . . Bda08g00771 . . . . Cmo19g00598 Cmo11g01390 . . . . . Cpe04g00302 Cpe15g00470 . . . . . . . Cla02g00632 . Cec02g0671 Cco02g0695 . . Cre02g0988 . Cone8ag1110 . . Lsi03g00528 Csa07g00726 . Cme01g00082 . . . . . . . . . . . Cma11g01725 Cma19g00582 Car11g01116 Car19g00444 . . . . . . . . . . . . . . . . . . Chy01g00087 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011017 4 0 1 1 2 0 2 0 0 1 1 0 2 1 1 2 0 1 2 0 1 1 0 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00582 Cma_Chr19 FPKM 4.734007 2.787916 13.200427 11.952752 27.542921 30.810703 31.226215 12.253631 13.608033 14.105003