Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00585 ATGGCTCTGCACCCAAATAAACACAGAATCAAACTCCACCATAGCTCGCTCTTCTTCCTGGACTTCCTCTACTGCACTGAAGAACAACAGCTTGAAACAGAGGATAACAATGGCGGCGGCTCCAACAACTTCCCTCTTTGGGAAGAGACGACCCATTTCCTTGTTTGTGAAGACGAGGAGCTCGATCGTTTGCTGTCCAAAGAACAGGACCAGAATCTTCAATACGGCGCTGTTCTGGAGAACTTGGTTCAAACAGAGGGTGCTCTGTTTTTGGCTAGAACAGAGGCTGTCGAATGGTTGCTTAAAGTTAATGCCTTTTATGGCTTCTCCTCTCTCACAGCTCTCTTAGCCATTAACTACCTTGATAGAGTCCTCACCGGCCGCCATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCCGTAACTTGCATTTCTTTAGCTGCCAAAGTCGAAGAAGTTCGTGTCCCTGTTCTTCAAGATCTCCAGGTGGAAGATTCAAAGTTCATTTTCGAAGCGAAAACGATACAGAGAATGGAGCTTTTGGTGCTCAGTGCTCTTCAATGGAAGATGCACGCAGTGACCCCTGTTTCATTTCTTGGCATTATAACAAAAGGGCTTGGATTGAAGAAGAATCAGTGCTTTCAGAAAGAGTTTCTGATACGCTTTGAGCGTATTCTCCTCTGTCTCGTCACTGATTCAAGATCGGTGGGGTTTCTTCCTTCTGTGATGGCGGTATCGGCAATGGTGAGCGTTGTTGAAGAGATGGGGAGCTGTAAGCCATTGGAGGAGTTTCAGGATCAGATTCTTAATGCCCTCAAAATAAACAAGGGAAGAGTGAAGGAGTGCTGCAAGGTGATAATGGAGGTATCAAAAGGGCAGGCCAAAGCAAAGGTATCAGGGAAGAGGAAGCATGTGGAGGAGGAGGTAGCAGAAGCAGAATCAGAAGGCGAAGCAGGGAGCCCAAATGGAGTAATAGAGGCCAATTTCAGCTGTGGAAGCTCCAACCATTCGTGGGGCATGGGGTCGCCTCTGTCACCATACACGCCTTCTTCTTCCAAAAGAATCAGACCCACTCCATGA 1086 47.15 MALHPNKHRIKLHHSSLFFLDFLYCTEEQQLETEDNNGGGSNNFPLWEETTHFLVCEDEELDRLLSKEQDQNLQYGAVLENLVQTEGALFLARTEAVEWLLKVNAFYGFSSLTALLAINYLDRVLTGRHFQRDKPWMLQLLAVTCISLAAKVEEVRVPVLQDLQVEDSKFIFEAKTIQRMELLVLSALQWKMHAVTPVSFLGIITKGLGLKKNQCFQKEFLIRFERILLCLVTDSRSVGFLPSVMAVSAMVSVVEEMGSCKPLEEFQDQILNALKINKGRVKECCKVIMEVSKGQAKAKVSGKRKHVEEEVAEAESEGEAGSPNGVIEANFSCGSSNHSWGMGSPLSPYTPSSSKRIRPTP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6507822 6510117 - CmaCh19G005850.1 Cma19g00585 315273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00585 361 SMART cyclin_7 98 186 IPR013763 -
Cma19g00585 361 Pfam Cyclin, C-terminal domain 195 308 IPR004367 -
Cma19g00585 361 PANTHER CYCLIN D3.1 PROTEIN 42 339 - -
Cma19g00585 361 SUPERFAMILY Cyclin-like 53 193 IPR036915 -
Cma19g00585 361 CDD CYCLIN 93 185 IPR013763 -
Cma19g00585 361 Gene3D - 194 286 - -
Cma19g00585 361 Pfam Cyclin, N-terminal domain 91 192 IPR006671 -
Cma19g00585 361 Coils Coil 297 317 - -
Cma19g00585 361 Gene3D - 83 193 - -
Cma19g00585 361 PANTHER CYCLINS 42 339 IPR039361 -
Cma19g00585 361 MobiDBLite consensus disorder prediction 328 361 - -
Cma19g00585 361 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Cma19g00585 361 MobiDBLite consensus disorder prediction 302 361 - -
Cma19g00585 361 SMART Cyclin_C_2 195 317 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01728 Cma19g00585 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00585 Cma-Chr19:6507822 Cma03g00834 Cma-Chr3:6287640 1.14E-45 dispersed
Cma01g01813 Cma-Chr1:12047797 Cma19g00585 Cma-Chr19:6507822 1.53E-71 wgd
Cma11g01728 Cma-Chr11:11487243 Cma19g00585 Cma-Chr19:6507822 1.83E-152 wgd
Cma12g00567 Cma-Chr12:2965391 Cma19g00585 Cma-Chr19:6507822 4.97E-77 wgd
Cma16g00347 Cma-Chr16:1632612 Cma19g00585 Cma-Chr19:6507822 3.87E-86 wgd
Cma19g00585 Cma-Chr19:6507822 Cma04g00476 Cma-Chr4:2429635 9.05E-82 wgd
Cma19g00585 Cma-Chr19:6507822 Cma05g00163 Cma-Chr5:698112 9.88E-76 wgd
Cma19g00585 Cma-Chr19:6507822 Cma07g00683 Cma-Chr7:3002281 5.98E-78 wgd
Cma19g00585 Cma-Chr19:6507822 Cma09g00261 Cma-Chr9:1092895 1.11E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00585 K14505 - csv:101222066 464.536