Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00587 ATGGATCCAAATTCTACTGATTCCCCAACATCACCTACTGTTAGTTCCTTGGAAACTAAACCACCAGAAGCACAGCCTCAGTCTTCTGCTACCATTGGAATGAATAATGTAGCCCCTGATTCACCATCTAAGCCATCTCCCAGTGACATAACTTCATGGACCAAAAGCTTGAGAATTACTCAATCACAGTCAGCTTCACAAGATGGCACGTCTGAGAATGCTGGGAAGTCAGCATTTGCACGTTTTACTAGTGGTTTAGGTTTGAACTTGTCTCCAAAATCCACTGCACCTAATGATTCCTCTGATGGAACCTCTAAAACTGCCCAACCCGGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGATTCTTCTAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCACAAAATAAGCGACGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAACATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAATCATATGGAAGAAGTCATCAAGTTCTTCGAAACACATCACAAGGGAAAATATAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCGTTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCGAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACCGGCTTGATGATTTCCAGTCTTCTTCTGTTTCTGAAGTTCTTTCCAACCTCTGATGAATCCATCGAATACTACAACCAGAGAAGGTGTTTCGATGGCAAGGGCCTGGTTTTACCAAGTCAGATTAGGTACATCAAGTATTTCGAGCGTATTTTAACATACTTCAATGGAGAAAATCCTCCCAACCGCAGGTGCGTGCTTCGAGGGTTTCGTCTCCACCGATGCCCATGTTGGATCAGGCCTTCCATTACGGTATCTGACCATAATGGCGTTCTGTTCTCCACTAAAATGCATCCAAGAATCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGGTAATGGTTTTCGCCTTGCCAGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTTCATGACCGCCAAGGAGACTTTTATTGCTGGCTAAACACAACCATGACCGAAGATCGGAAAATGCTCAACACAAATGATCTTGATGGGTTTGATAAGAGGACACTGCCTTCCCCTGGATTTCAGGTGGAGGTTATTCTAGTAGATACCTCGCCGAACAAGGACAATACTACCAAGAAGTTGGATGAAAGCTCAGGGTCAAAACCTTCTACAGTTCATGAGAGTGAAGTTTCTGAGAACCAAAACAGAAAACCAGGAACTCATGATAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGGATGCAACTGCAGGATCAGCTATCAAGACGACATCCAAATCTCAAACGACTGCGACTTCATCAGACAACGTTGCAAGTTTATCACATGCAACGAAGCAAGCTTCCTTGAGAGATGGTAGAGCGAAACAGACTGCTCTCACAGAAGTTCCAAACTCGGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTCGGCGATGACGACGAGGAGATCGAGTAA 1773 43.37 MDPNSTDSPTSPTVSSLETKPPEAQPQSSATIGMNNVAPDSPSKPSPSDITSWTKSLRITQSQSASQDGTSENAGKSAFARFTSGLGLNLSPKSTAPNDSSDGTSKTAQPGFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCRSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTSDESIEYYNQRRCFDGKGLVLPSQIRYIKYFERILTYFNGENPPNRRCVLRGFRLHRCPCWIRPSITVSDHNGVLFSTKMHPRIKSLSPEDFWFTAPKKGVMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTEDRKMLNTNDLDGFDKRTLPSPGFQVEVILVDTSPNKDNTTKKLDESSGSKPSTVHESEVSENQNRKPGTHDKDDVFSDSESEGGSSKSKDATAGSAIKTTSKSQTTATSSDNVASLSHATKQASLRDGRAKQTALTEVPNSESEFKAMAADASVFTFGDDDEEIE 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6516097 6522524 - CmaCh19G005870.1 Cma19g00587 315275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00587 590 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Cma19g00587 590 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Cma19g00587 590 Gene3D - 348 458 - -
Cma19g00587 590 MobiDBLite consensus disorder prediction 87 112 - -
Cma19g00587 590 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 325 IPR029021 -
Cma19g00587 590 MobiDBLite consensus disorder prediction 1 74 - -
Cma19g00587 590 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Cma19g00587 590 MobiDBLite consensus disorder prediction 462 476 - -
Cma19g00587 590 CDD PTP_PTEN 154 319 IPR045101 GO:0016791
Cma19g00587 590 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 15 587 - -
Cma19g00587 590 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 15 587 - -
Cma19g00587 590 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Cma19g00587 590 SMART PTEN_C2_2 328 456 IPR014020 -
Cma19g00587 590 MobiDBLite consensus disorder prediction 484 510 - -
Cma19g00587 590 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 237 297 IPR000387 GO:0016311|GO:0016791
Cma19g00587 590 MobiDBLite consensus disorder prediction 453 564 - -
Cma19g00587 590 MobiDBLite consensus disorder prediction 511 564 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01730 Cma19g00587 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00587 Cma-Chr19:6516097 Cma09g00412 Cma-Chr9:1750408 4.78E-07 dispersed
Cma14g00570 Cma-Chr14:2850326 Cma19g00587 Cma-Chr19:6516097 2.08E-06 transposed
Cma11g01730 Cma-Chr11:11504002 Cma19g00587 Cma-Chr19:6516097 0 wgd
Cma19g00587 Cma-Chr19:6516097 Cma07g00685 Cma-Chr7:3010426 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00587 K01110 - csv:101222304 1014.6