Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00589 ATGCCAAAGAGGGGGAACATGGCCAAGCCCTCTCCTCTTCCCCTTCTCTTCCTTTTTTCTATCTTCTCCACGGCGGCGATTGCCCTACACGTTCCGCCGCCTACTACCGATCCTCAAGTAAAACATCCCCTCACGTTCTTTTTCTTCCCCTGGCATACTCCTCCTCCGCCTCCAGAATATCCTCCTCCTCCTCCGCCTCCACCTCCACCTCCACCACCTCCGCCTCCGCCTCCTCCTCCACCTCCACCACCTCCGCCTCCGCCTCAAAAACCTTACTGTGCCACTCCATCACCACCACCACCTAAACCAAAAGTCCAACCACCGCCGCCGCCACCTCCGCCGCCGACGCCGTCACCACCACCACCCAAACCAAAAGTGCACCCACCTCCGCCACCTAAAAAAAAAATCCGCCCGCCGCCCCGACCGTCGCCGCCGCCATTCATAAGCCCAAGAATCAAAATTGCTTACCAAACCATAAAAGATTTCAAACCCAGAATTGAAGATGACCCATTGAACATAACAAATTCATGGGTAGGAAAAGACGTTTGTAAATACAAAGGATTCATCTGCGACAAAGTCCCCGATTACAAAACCACCGCCTTGGCCGGAGTTAGCTTTAACAACTTCGGATTCGGTGGTTCTAACCTGATTCTCAATGGCTTCATCGACCGTTTTCCCGACATTACTTTCTTCCATGCAAACTCCAATAACTTCTCCGGCACCGTCCCCGAACTCATCTCCGATCTCCGATACTTCTACGAGCTTGATCTCAGCAACAACAAATTCGCCGGCGCCTTCCCTAACCAAGTCCTTGACGCCACCAATCTCACCTTCTTGGATATCCGGTTCAACGACTTCTCCGGTCCCGTCCCGCCCAAGCTCTTCGATATGGACATTATCTCTGCCATCCTCCTTAACAACAACAAGTTTAACCATTTCCTTCCGGCCAACCTCGGCAACACCCCTGCTCGTTACCTCACTTTTACAAGCAACGAGTTTTGCGGACCAATCCCAAAAAGCGTCGGAATCGGAAAGACAAAGAAAACCCTAATCGAGGTTCTCTTCTCAGACAACAAGCTCTCTGGGTGCTTACCGATGGAGATCGGGGTTTTAGAGAACACAATTCTCTTCGACGCAAGCAAGAACATCCTCACCGGCCCGATCCCCTACTCCTTCGGCTGCTTAGCCAAAATGGAGCTTCTCAACTTCGCCGACAACCGCCTCTACGGCGCCATTCCGGAGATGGTCTGCCAGTTACCCCACCTCCAAAACTTCACCCTTCGCAACAACTACTTCACCCAAGTCGGCCCTGTCTGCCGGAGTTTGATCGTAAAAAAGATTCTCGACGTCTCAGGGAACTGCATTCTCGGGCTTCCGGACCAGAAATCTAAGGAGGAATGTACCCATTTCTTCAGCCATGTTCAGTACTGCCCTGATGAGAAGTCAATGAAGTACATTCCTTGTAAAGGGGTTTGGTACTTGAATGAAGATCCGGCCGCCGCGCTCCGTCGGCCGGCGAGGAAGGCGACGGAGATGAGAACTTACGGGGCTCTTGTCCCACATTAA 1566 52.43 MPKRGNMAKPSPLPLLFLFSIFSTAAIALHVPPPTTDPQVKHPLTFFFFPWHTPPPPPEYPPPPPPPPPPPPPPPPPPPPPPPPPPPPQKPYCATPSPPPPKPKVQPPPPPPPPPTPSPPPPKPKVHPPPPPKKKIRPPPRPSPPPFISPRIKIAYQTIKDFKPRIEDDPLNITNSWVGKDVCKYKGFICDKVPDYKTTALAGVSFNNFGFGGSNLILNGFIDRFPDITFFHANSNNFSGTVPELISDLRYFYELDLSNNKFAGAFPNQVLDATNLTFLDIRFNDFSGPVPPKLFDMDIISAILLNNNKFNHFLPANLGNTPARYLTFTSNEFCGPIPKSVGIGKTKKTLIEVLFSDNKLSGCLPMEIGVLENTILFDASKNILTGPIPYSFGCLAKMELLNFADNRLYGAIPEMVCQLPHLQNFTLRNNYFTQVGPVCRSLIVKKILDVSGNCILGLPDQKSKEECTHFFSHVQYCPDEKSMKYIPCKGVWYLNEDPAAALRRPARKATEMRTYGALVPH 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6530100 6532343 + CmaCh19G005890.1 Cma19g00589 315277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00589 521 MobiDBLite consensus disorder prediction 57 150 - -
Cma19g00589 521 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 112 519 - -
Cma19g00589 521 MobiDBLite consensus disorder prediction 135 149 - -
Cma19g00589 521 PRINTS Proline rich extensin signature 34 55 - -
Cma19g00589 521 PRINTS Proline rich extensin signature 57 73 - -
Cma19g00589 521 PRINTS Proline rich extensin signature 74 91 - -
Cma19g00589 521 PRINTS Proline rich extensin signature 96 121 - -
Cma19g00589 521 SUPERFAMILY L domain-like 168 458 - -
Cma19g00589 521 Gene3D Ribonuclease Inhibitor 155 346 IPR032675 -
Cma19g00589 521 Gene3D Ribonuclease Inhibitor 347 472 IPR032675 -
Cma19g00589 521 MobiDBLite consensus disorder prediction 57 127 - -
Cma19g00589 521 PANTHER BNAC05G26270D PROTEIN 112 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00589 - - - cmax:111471075 767.689
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01736 Cma19g00589 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00478 Cma-Chr4:2437964 Cma19g00589 Cma-Chr19:6530100 2.12E-136 dispersed
Cma05g00165 Cma-Chr5:706144 Cma19g00589 Cma-Chr19:6530100 4.04E-112 dispersed
Cma12g00565 Cma-Chr12:2946221 Cma19g00589 Cma-Chr19:6530100 8.39E-113 dispersed
Cma16g00348 Cma-Chr16:1643388 Cma19g00589 Cma-Chr19:6530100 3.84E-134 dispersed
Cma16g00349 Cma-Chr16:1648343 Cma19g00589 Cma-Chr19:6530100 1.92E-108 dispersed
Cma19g00589 Cma-Chr19:6530100 Cma11g01736 Cma-Chr11:11524791 0 dispersed
Cma19g00588 Cma-Chr19:6526942 Cma19g00589 Cma-Chr19:6530100 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00589 Cma_Chr19 FPKM 0.0 0.0 8.343457 7.703155 145.615601 122.573746 138.231522 0.0 0.0 0.106873