Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00596 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGACCCGGCTGCCAATGGAGGCGGAAATCAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAACGTCACCGACTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCGAGGGCATTGGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCTATTAGAGTCATGTATTCGCATCGCGACCCTAGCATGCGGAAGAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTCTCTGCATTTGGAAACATTCTCTCCTGCAAGGTTGCTACAGATTCGTCTGGGCAGTCTAAAGGCTTTGGTTTCGTACAATTTGATACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTCAACGACAAGCAGGTGTTCGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAACAATGTTTTTGTTAAGAATTTAGCAGAAACTACATCTGAAGAAGATTTGAGGAATATGTTTGGGGAGTTTGGACCAATTACCAGCGTTGTGGTCATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAAATGCGGACGATGCTGCTAGATCTGTTGATGCTCTCAATGGAAACAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTAAAGAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATACCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCATTTGGAACCATTACCTCATGCAAGGTTATGCGTGATCCCAATGGACTGAGTAGAGGGTCTGGCTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGACAGAAGAGCTAGGTTGCAGGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAAATATTTTACGGACAAGCTCCACCTACTATTATTTCATCACAGCCTGGATTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGAAGGCGAGCTGGTGCTATTCAGCAATCCCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGGCGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCGCCGCGGGATGCTGTCCACCCTCAACCAGTTCCTGTTGGCGCTTTGGCTTCTGCCCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTTGGGGAAAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCACCGGAAGCTCTGAAGGCGAAGGTTGCCGAGGCCATGGAGGTTTTAAGAAGTGTTTCTCAGCAGACGGGCAATGCAGCTGCTGATCAGTTGGCTTCATTATCTCTGACTGACAACCTTGATTCCTAA 1953 47.0 MAQVPPQPQVPNSGADPAANGGGNQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLRNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVDALNGNKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQSQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVSQQTGNAAADQLASLSLTDNLDS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6565911 6569545 + CmaCh19G005960.1 Cma19g00596 315284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00596 650 SUPERFAMILY RNA-binding domain, RBD 208 388 IPR035979 GO:0003676
Cma19g00596 650 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Cma19g00596 650 Gene3D - 199 293 IPR012677 -
Cma19g00596 650 Gene3D - 547 631 - -
Cma19g00596 650 MobiDBLite consensus disorder prediction 1 23 - -
Cma19g00596 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Cma19g00596 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cma19g00596 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cma19g00596 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cma19g00596 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Cma19g00596 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cma19g00596 650 PANTHER RNA BINDING PROTEIN 18 634 - -
Cma19g00596 650 CDD RRM4_I_PABPs 310 388 - -
Cma19g00596 650 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Cma19g00596 650 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cma19g00596 650 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Cma19g00596 650 Gene3D - 16 118 IPR012677 -
Cma19g00596 650 SUPERFAMILY PABC (PABP) domain 493 642 IPR036053 GO:0003723
Cma19g00596 650 Gene3D - 294 397 IPR012677 -
Cma19g00596 650 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cma19g00596 650 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cma19g00596 650 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cma19g00596 650 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cma19g00596 650 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cma19g00596 650 CDD RRM1_I_PABPs 30 109 - -
Cma19g00596 650 MobiDBLite consensus disorder prediction 477 497 - -
Cma19g00596 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cma19g00596 650 Gene3D - 119 198 IPR012677 -
Cma19g00596 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cma19g00596 650 CDD RRM3_I_PABPs 207 286 - -
Cma19g00596 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cma19g00596 650 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cma19g00596 650 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cma19g00596 650 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cma19g00596 650 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cma19g00596 650 SMART poly_2 564 627 IPR002004 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01739 Cma19g00596 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02473 Cma-Chr4:16978739 Cma19g00596 Cma-Chr19:6565911 0 dispersed
Cma14g00253 Cma-Chr14:1102157 Cma19g00596 Cma-Chr19:6565911 2.72E-19 dispersed
Cma14g01521 Cma-Chr14:11514908 Cma19g00596 Cma-Chr19:6565911 1.23E-24 dispersed
Cma15g00568 Cma-Chr15:2660471 Cma19g00596 Cma-Chr19:6565911 0 dispersed
Cma16g00566 Cma-Chr16:2906039 Cma19g00596 Cma-Chr19:6565911 4.23E-07 dispersed
Cma19g00596 Cma-Chr19:6565911 Cma18g00250 Cma-Chr18:1323731 1.46E-07 dispersed
Cma11g01739 Cma-Chr11:11541978 Cma19g00596 Cma-Chr19:6565911 0 wgd
Cma16g00351 Cma-Chr16:1656513 Cma19g00596 Cma-Chr19:6565911 0 wgd
Cma19g00596 Cma-Chr19:6565911 Cma04g00481 Cma-Chr4:2449726 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00596 K13126 - csv:101223017 1182.16