Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00600 ATGAATTTCAGGAGCTTTGAGGATATGCCACCAGGAGAAGGCACCATGGCTAAGACACAAGGAAATTTCACATTAACCAGACAGCCTTCCATATACTCTTTAACCTTTGATGAATTTCAGAACACATGGAATGGACTTGGAAAGGATGTTGGTTCAATGAATATGGATGAACTTCTAAAAAACATATGGACAGCAGAAGAGTCTCAGGCAATGACATCTACAGCTGCTGCTGTGGGCGGAGCTGGAAGCACCAATGGTGGGAACTTGCAGAGACAAGGTTCATTAACATTACCACGGACCATTAGTCAAAAAACGGTTGATGAAGTTTGGAAAGACTTGAGCAAAGAGGGAAGTGGAATCGAGGCAACGCCTCGACGACAACCAACGTTAGGGGAGGTGACATTGGAGGAGTTCTTAGCTAGAGCTGGAGTGGTAAGAGAGGAGCCTCGACGTGTCGAGGATCGGCCGTTTAGCTGTGGATTTTTTGGTGGATTGTCAAGAGATGACAACAATGCTTGCTTGGCTCTTGGGATGTTCATGGAAAATCAGATAGCTGAGAACAAAAACAATGGTGGTTTGGCTCATGGGATGTTAAGTGCAGGAGCTGTAAGGTCTCCTCAGCAGCAGCAGCAGCCACTTTTTCCCAAACCAGCTACTGTGACCTTTGCTTCTTCAATGAATTTAGTGAACAATCATCCACAGCATACTACTGGAGCTGCTACTAATTTGGTTGTGGCTCCCAAACCTTCTTTATATGATCCTTTAATTCAGGGCAGTGGTGTCGGTGCGATCGGTTTAGGCACGGGATGTGTAACTGTTGCTTCAAGATCTCCTACAAGCACAATATCATCTGACATGATTACAAAAAACAGCATATCTACATCTTCATTTTCTCCAGTTCCATATTCGTTTGGTCGGGGAAGGCGAAGCGGTGGAGTGTTGGAGAAAGTCGTCGAGAGGAGGCAACGACGAATGATAAAGAACCGAGAGTCGGCTGCAAGATCACGAGCTCGTAAACAGGCATACACCTTGGAACTTGAAGCAGAAGTTGCAAAACTCAAAGAAATGAACCAAGAATTGCAGAAGAAACAGAGAGAGATAATGGAAACCCAGAAAGATCAGGTTTTGGAGAAGATGAAATGTCATTTTGGTGCCAAAAGGCTCTGCTTAAGAAGAACACTGACAGGCCCTTGGTAG 1197 44.95 MNFRSFEDMPPGEGTMAKTQGNFTLTRQPSIYSLTFDEFQNTWNGLGKDVGSMNMDELLKNIWTAEESQAMTSTAAAVGGAGSTNGGNLQRQGSLTLPRTISQKTVDEVWKDLSKEGSGIEATPRRQPTLGEVTLEEFLARAGVVREEPRRVEDRPFSCGFFGGLSRDDNNACLALGMFMENQIAENKNNGGLAHGMLSAGAVRSPQQQQQPLFPKPATVTFASSMNLVNNHPQHTTGAATNLVVAPKPSLYDPLIQGSGVGAIGLGTGCVTVASRSPTSTISSDMITKNSISTSSFSPVPYSFGRGRRSGGVLEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELQKKQREIMETQKDQVLEKMKCHFGAKRLCLRRTLTGPW 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6585446 6589819 + CmaCh19G006000.1 Cma19g00600 315288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00600 398 MobiDBLite consensus disorder prediction 74 95 - -
Cma19g00600 398 Coils Coil 339 373 - -
Cma19g00600 398 MobiDBLite consensus disorder prediction 1 20 - -
Cma19g00600 398 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 9 398 IPR043452 GO:0003700|GO:0045893
Cma19g00600 398 SMART brlzneu 316 381 IPR004827 GO:0003700|GO:0006355
Cma19g00600 398 Pfam bZIP transcription factor 320 370 IPR004827 GO:0003700|GO:0006355
Cma19g00600 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 318 369 IPR004827 GO:0003700|GO:0006355
Cma19g00600 398 PANTHER ABSCISIC ACID-INSENSITIVE 5-LIKE PROTEIN 7 9 398 - -
Cma19g00600 398 SUPERFAMILY Leucine zipper domain 320 368 IPR046347 GO:0003700|GO:0006355
Cma19g00600 398 Gene3D - 318 373 - -
Cma19g00600 398 CDD bZIP_plant_BZIP46 320 374 - -
Cma19g00600 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 323 338 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00305 Cma-Chr14:1351951 Cma19g00600 Cma-Chr19:6585446 3.78E-59 dispersed
Cma19g00600 Cma-Chr19:6585446 Cma15g00547 Cma-Chr15:2546949 1.45E-42 dispersed
Cma11g01743 Cma-Chr11:11569204 Cma19g00600 Cma-Chr19:6585446 0 wgd
Cma12g00556 Cma-Chr12:2893482 Cma19g00600 Cma-Chr19:6585446 2.61E-81 wgd
Cma19g00600 Cma-Chr19:6585446 Cma05g00180 Cma-Chr5:760821 1.93E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36895 PF00170 bZIP_1 4.40E-12 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00600 K14432 - csv:101203950 603.208