Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00602 ATGGGTATGTTATCAAAGCAAAAAATCTGTAGAACAGGAACGACCCATAATGATTCGATGGGTTTTAATGGGGTTTCTCCAGCAAGCAAGTGGAAATGGACCCATTTCTTGCCTCTGTTTGTAGCGATGGTGGTCATAGCAGAGATCGCTTCTCTAAGTCGGCTCGATATCGCGAAAAATGCGGCTATGGTGGACTCTTGGGTCGACTTATTCTATGGACCTCCGCCTTTGCAAGAAGAAATCGAAGATGTTAGCACTGGAATCACAATTGATGGAGTAATGGGTAGAGTTAACTGTGAGGAGTGGCTGGAGAAGGTGGATGCGGTGGAGTACTCTAGGGACTTCAAAAGGAAACCTGTTTTGGTTTCTGGGTCCGAGAAGGATTGGAAAACTTGTGATGTGGGATGCCAGTTTGGATTGAATCCTGGTGAGCAGCCTGATGCTGCATTGGGATCACCTCAACAAGGTCATGTTGCTAGCGTCCTTCGTTCGATGGAATCGTCGCATTACTATCCAGAGAACAATATTGCTTTGGCAAGACGGAAGGGTTACACTGTGGTTATGACCACTAGTCTTTCATCAGACGTTCCTGTTGGATATTTTTCGTGGGCAGAATACGACATAATGGCACCAGTTCAACCAAAGACTGAGCCTGCCCTTGCAGCTGCCTTCATTTCGAATTGTGGCGCCCGCAACTTTCGTTTGCAAGCTCTTGAAGCACTTGAGAAATTTGATGTCAAAATTGATTCTTATGGTAGTTGCCACAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAATGAGGAAGATTATGTCACAGAGAAGTTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGTACTCCAAATATCAAGGAGTTTGCTCCTTCTCCTGATTCATATTTGCATATCAAGGAAATTTCCGATGTCGAGTCGGTTGCCAAGTCGATGAAATACCTCGCAGAAAATCCCAAAATGTACAACCAATCACTAAGATGGAAGTATGATGGTCCGTCCGATTCGTTCAAGGCCCTTGTCGATATGGCAGCAGTACACTCATCGTGCCGCCTTTGCATCCACTTGGCAACCATCATCCACGAGAAAGAAGAAAACAGTCCCGAGTTCAAGAAACGACCGTGCAAGTGCTCTCATGGCTCCGAAACGGTGTATCATTTATACGTAAGGGAGAGAGGGCGGTTTGAAATGCAATCCATTTTCTTGAGGTCGGGAAATTTAACGTTGGGGGCTTTAGAATCGAGAGTACTCGAAAAGTTCAAGTCTTTGAAACATGTCCCAATTTGGAAGCAAGAACGGCCTGAAAGCTTAAGAGGAGGAGATGAACTAAAGCTATATAGGATATATCCTGTTGGGTTGACACAGAAGCAGGCTTTATATACCTTCAGATTCAAAGGTAATGATGATTTCAAAACTCACATAGAAACACACCCTTGTGCTAAGATGGAAATCATATTTGTCTGA 1530 44.38 MGMLSKQKICRTGTTHNDSMGFNGVSPASKWKWTHFLPLFVAMVVIAEIASLSRLDIAKNAAMVDSWVDLFYGPPPLQEEIEDVSTGITIDGVMGRVNCEEWLEKVDAVEYSRDFKRKPVLVSGSEKDWKTCDVGCQFGLNPGEQPDAALGSPQQGHVASVLRSMESSHYYPENNIALARRKGYTVVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALEALEKFDVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGTPNIKEFAPSPDSYLHIKEISDVESVAKSMKYLAENPKMYNQSLRWKYDGPSDSFKALVDMAAVHSSCRLCIHLATIIHEKEENSPEFKKRPCKCSHGSETVYHLYVRERGRFEMQSIFLRSGNLTLGALESRVLEKFKSLKHVPIWKQERPESLRGGDELKLYRIYPVGLTQKQALYTFRFKGNDDFKTHIETHPCAKMEIIFV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6599899 6605384 + CmaCh19G006020.1 Cma19g00602 315290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00602 509 Gene3D - 166 357 IPR038577 -
Cma19g00602 509 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 381 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cma19g00602 509 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 104 385 - -
Cma19g00602 509 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 33 486 - -
Cma19g00602 509 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 33 486 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00602 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101205170 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00355 Cma-Chr16:1681365 Cma19g00602 Cma-Chr19:6599899 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01674 . 100 553 Xyloglucan Fucosyltransferase1 AT1G14080 55.2 5.7e-150 528.5
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 51.9 4.1e-148 522.3
Cma04g01674 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 8.4e-159 557.8
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 3.5e-157 552.4
Cma04g01674 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 1.2e-130 464.2
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 3.5e-189 658.7
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 1.1e-182 637.1
Cma15g00557 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 68.9 2.1e-165 579.3
Cma04g02480 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.1e-161 567.0
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 36 553 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 2.1e-192 669.5
Cma01g00798 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 59.2 5.1e-186 648.3
Cma16g00475 . 147 638 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 7.7e-150 528.1
Cma13g01145 . 7 252 Xyloglucan Fucosyltransferase1 AT2G03220 56.5 9.0e-98 355.1
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15350 52.5 6.9e-145 511.5
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15370 51.7 3.4e-139 492.7
Cma04g01674 . 92 553 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 6.7e-143 505.0
Cma01g00798 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 50.8 9.1e-140 494.6
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 3.8e-188 655.2
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT3G19280 64.5 1.1e-184 643.7
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 36 553 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 2.1e-192 669.5
Cma01g00798 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 59.2 5.1e-186 648.3
Cma16g00475 . 147 638 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 7.7e-150 528.1
Cma13g01145 . 7 252 Xyloglucan Fucosyltransferase1 AT2G03220 56.5 9.0e-98 355.1
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 92 553 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 6.7e-143 505.0
Cma01g00798 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 50.8 9.1e-140 494.6
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15370 51.7 3.4e-139 492.7
Cma04g01674 . 100 553 Xyloglucan Fucosyltransferase1 AT1G14080 55.2 5.7e-150 528.5
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 51.9 4.1e-148 522.3
Cma04g01674 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 8.4e-159 557.8
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 3.5e-157 552.4
Cma04g01674 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 1.2e-130 464.2
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15350 52.5 6.9e-145 511.5
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 3.8e-188 655.2
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT3G19280 64.5 1.1e-184 643.7
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 3.5e-189 658.7
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 1.1e-182 637.1
Cma15g00557 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 68.9 2.1e-165 579.3
Cma04g02480 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.1e-161 567.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00602 Cma_Chr19 FPKM 6.379991 5.731393 7.834846 7.587908 18.698452 16.318041 16.32687 4.889586 4.959223 5.332039