Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma19g00604 | ATGGCGTCCACCAACAACACACCAGAAAACCAGAACCAAGCCGGAAGGCACCAGGAAGTCGGCCACAAGAGCCTCTTGCAGAGCGATGCTCTGTATCAGTACATTCTTGAGACGAGCGTTTATCCAAGAGAGCCTGAATCGATGAAGGAATTGAGAGAATTGACTGCCAAACATCCATGGAACATCATGACTACATCGGCGGACGAAGGCCAGTTCTTAAACATGCTTTTGAAACTAATTAATGCGAAGAAAACGATGGAGATTGGAGTATACACTGGCTACTCTCTTCTCGCTACAGCCCTAGCACTTCCGGAAGACGGACAGATTCTGGCTATGGATATTAACAGAGAAAATTACGAGCTCGGTTTACCGGTGATTGAGAAAGCCGGCGTTGCTCACAAGATCGAGTTCAAGGAAGGCCCCGCGCTCCCTGTTCTTGACGAGATGGTGGCTGATGAGAAAAATCATGGAAGCTATGACTTCATTTTTGTGGATGCGGATAAAGACAACTACATAAATTATCATAAGAGATTGATAGATTTGGTGAAAGTTGGAGGATTGATCGGGTACGACAACACGCTATGGAACGGATCAGTGGTTGCTCCACCTGACGCCCCACTACGCAAGTATGTTAGGTACTATAGGGACTTTGTGTTGGAGCTCAACAAGGCTCTCGCTGCTGATCCAAGGATCGAGATTTGTATGCTCCCTGTTGGTGATGGAATCACTCTCTGTCGTCGGATCAACTGA | 750 | 47.07 | MASTNNTPENQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKKTMEIGVYTGYSLLATALALPEDGQILAMDINRENYELGLPVIEKAGVAHKIEFKEGPALPVLDEMVADEKNHGSYDFIFVDADKDNYINYHKRLIDLVKVGGLIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRIN | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 6614743 | 6616186 | + | CmaCh19G006040.1 | Cma19g00604 | 315292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma19g00604 | 249 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cma19g00604 | 249 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 28 | 247 | IPR029063 | - | |
| Cma19g00604 | 249 | CDD | AdoMet_MTases | 87 | 188 | - | - | |
| Cma19g00604 | 249 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 24 | 248 | IPR002935 | GO:0008171 | |
| Cma19g00604 | 249 | PANTHER | CAFFEOYL-COA O-METHYLTRANSFERASE 1 | 6 | 249 | - | - | |
| Cma19g00604 | 249 | Pfam | O-methyltransferase | 37 | 248 | IPR002935 | GO:0008171 | |
| Cma19g00604 | 249 | PANTHER | O-METHYLTRANSFERASE-RELATED | 6 | 249 | - | - | |
| Cma19g00604 | 249 | Gene3D | Vaccinia Virus protein VP39 | 23 | 249 | IPR029063 | - | |
| Cma19g00604 | 249 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00642 | Cma-Chr4:3286773 | Cma19g00604 | Cma-Chr19:6614743 | 4.14E-49 | dispersed | |
| Cma18g00702 | Cma-Chr18:6407403 | Cma19g00604 | Cma-Chr19:6614743 | 3.04E-87 | dispersed | |
| Cma18g00703 | Cma-Chr18:6423744 | Cma19g00604 | Cma-Chr19:6614743 | 1.10E-85 | dispersed | |
| Cma11g01751 | Cma-Chr11:11628039 | Cma19g00604 | Cma-Chr19:6614743 | 6.73E-180 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma19g00604 | K00588 | - | csv:101205648 | 486.878 |