Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00606 ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATCGTCGACGCCCTCACCCACGTCGTCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCTCCCGCCTTCTACTAACAACGATATCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGACTGCAGAATCAACGGCTGCTTGGGCTGCCACTTGTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCCGCCGTATCAGACTCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCATGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACCCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTAACAACTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAACTGGCAGTAGCTCCAAGAGCATCTCCGATGAAAATGGAGGCGAAAAACTACACCTTACCGGAGATTTTCAAGGTTGATGACGATGACGAAAACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCAAATCCAAACCATTGA 699 57.65 MSSYRPAVFRRITEEQEVSIIVDALTHVVSGAAASGLEFRHDDFLRRLLLLPPSTNNDIAAAFSGSSDFDTCQDCRINGCLGCHLFSAPSSSSSSSSSSTTRRIRLLKKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPNNSSTTSTTTSAVNELAVAPRASPMKMEAKNYTLPEIFKVDDDDENDIQRLINDFAGHSNPNH 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6638726 6639424 + CmaCh19G006060.1 Cma19g00606 315294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00606 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 208 - -
Cma19g00606 232 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Cma19g00606 232 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Cma19g00606 232 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Cma19g00606 232 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Cma19g00606 232 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Cma19g00606 232 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Cma19g00606 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 10 208 - -
Cma19g00606 232 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Cma19g00606 232 CDD AP2 109 167 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00606 - - - bhj:120078250 242.276
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01754 Cma19g00606 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00606 Cma-Chr19:6638726 Cma09g00846 Cma-Chr9:4147500 8.74E-29 dispersed
Cma20g01103 Cma-Chr20:8591320 Cma19g00606 Cma-Chr19:6638726 2.42E-31 transposed
Cma11g01754 Cma-Chr11:11688280 Cma19g00606 Cma-Chr19:6638726 3.74E-78 wgd
Cma16g00358 Cma-Chr16:1703592 Cma19g00606 Cma-Chr19:6638726 5.58E-42 wgd
Cma19g00606 Cma-Chr19:6638726 Cma04g00494 Cma-Chr4:2534801 1.48E-46 wgd
Cma19g00606 Cma-Chr19:6638726 Cma07g00709 Cma-Chr7:3116250 3.11E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36896 PF00847 AP2 1.40E-14 CL0081 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00606 Cma_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.935056 2.124127 2.240059