Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00609 ATGCCAATGAACTCGAACCTCCTGGACCTGCAATACAGTGTCTTAAAGAAAAAGTTCCTCCGGGAACCCTCCCGTCTGTTCTCCTTCAAGAACCGACAGAGCTCAGGACTCCGGCAGGCGTTGCAGCCGAGCATGGAGGAGATAAAGCAGATCTTCAAATGGTTCGACACTAACAGAGATGGGAGGATCTCAAAGCATGAATACAGGGGAATTCTGGAGGCACTGGGGAGAGGGAGCTCCATGGAAGAGGTGCAGAAGATTTTCAAGGCAGTGGACACTGACGGCGATGGTTACATAAACTTGAACGAGTTTATGGAGGTTCTCCGGAGCGGAGTTCAGACTCGAGAGGTGGAATCTGCTTTCAAGACGTTTGATGTGAATGGGGATCAGAAGATTAGTGCCGAGGAAGTGATGAGAGTGTTGAAGGGATTAGGGGAAAAGTGTAGCATTGAGGATTGCCGGCGGATGGTGAGGGCGGTGGACAGGAACGGCGACGGCATGGTGGATATGGATGAGTTTATGACAATGATGACTCGGTCTGCAAACTCGTCTCCAATCGGTACCTTGTTTCGTAGTTCGCATAAGGATATTGATGGTCTAACACTTTACATCGAGCTGCTATTGGGAAGATAA 633 49.45 MPMNSNLLDLQYSVLKKKFLREPSRLFSFKNRQSSGLRQALQPSMEEIKQIFKWFDTNRDGRISKHEYRGILEALGRGSSMEEVQKIFKAVDTDGDGYINLNEFMEVLRSGVQTREVESAFKTFDVNGDQKISAEEVMRVLKGLGEKCSIEDCRRMVRAVDRNGDGMVDMDEFMTMMTRSANSSPIGTLFRSSHKDIDGLTLYIELLLGR 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6647034 6648209 + CmaCh19G006090.1 Cma19g00609 315297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00609 210 CDD EFh 116 178 IPR002048 GO:0005509
Cma19g00609 210 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Cma19g00609 210 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 181 - -
Cma19g00609 210 Gene3D - 7 113 - -
Cma19g00609 210 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Cma19g00609 210 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Cma19g00609 210 ProSiteProfiles EF-hand calcium-binding domain profile. 116 147 IPR002048 GO:0005509
Cma19g00609 210 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Cma19g00609 210 CDD EFh 47 109 IPR002048 GO:0005509
Cma19g00609 210 PRINTS Recoverin family signature 51 72 - -
Cma19g00609 210 PRINTS Recoverin family signature 97 115 - -
Cma19g00609 210 PRINTS Recoverin family signature 75 94 - -
Cma19g00609 210 SUPERFAMILY EF-hand 42 178 IPR011992 -
Cma19g00609 210 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Cma19g00609 210 Pfam EF-hand domain pair 46 108 IPR002048 GO:0005509
Cma19g00609 210 Pfam EF-hand domain pair 118 177 IPR002048 GO:0005509
Cma19g00609 210 SMART efh_1 83 111 IPR002048 GO:0005509
Cma19g00609 210 SMART efh_1 47 75 IPR002048 GO:0005509
Cma19g00609 210 SMART efh_1 152 180 IPR002048 GO:0005509
Cma19g00609 210 SMART efh_1 116 144 IPR002048 GO:0005509
Cma19g00609 210 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Cma19g00609 210 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Cma19g00609 210 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 6 181 - -
Cma19g00609 210 Gene3D - 114 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00609 K13448 CML; calcium-binding protein CML - csv:101219869 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00554 Cma-Chr2:3116640 Cma19g00609 Cma-Chr19:6647034 4.52E-06 dispersed
Cma15g00979 Cma-Chr15:5513484 Cma19g00609 Cma-Chr19:6647034 9.63E-12 dispersed
Cma19g00609 Cma-Chr19:6647034 Cma11g00307 Cma-Chr11:1534349 1.13E-06 dispersed
Cma19g00609 Cma-Chr19:6647034 Cma04g02105 Cma-Chr4:14718505 6.60E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012967 0 1 0 0 0 1 1 1 1 0 1 1 1 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00609 Cma_Chr19 FPKM 0.243618 0.466131 1.810952 1.454025 0.103966 0.0 0.164162 0.211421 0.231453 0.213534