Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00610 ATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAACTTAATCTCAACAAGCTAGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAGCAGCTAAAGCGTCCTCGTCAGCCACTCGATATCTCGTCCTTAAGTGTGAGAAGATCCAGCCGTTTTGCGGATAAGCCCCCTCCAAGCTATAAGGAGGAGCCCATTGAACCACTTGCATGTTTAAGAAGGACTTATCAAAGGAGGGATTTGTTGAATCGGGTTTATGCTTCAGATGTGGAAAGGCAATATGCCATTGACAGAGCACGAGACCTTCAATCTAGCCTGGAGTCTAGATACCCAAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACCGGGGGATTTTGGCTGGGTCTCCCAGTTCATTTTTGCAAGGCACACCTTCCCCTTGAGGATGAAATGTTAACTCTGGTGGACGAGGATGAAAATGAGTTCCAAACAAAATACCTTGCCGAAAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATACTTTGGTGTTTCAGTTAAATAAGCCGACTGAATTCAAGGTGTATATCATCAGGGCATACAATTTAGAAGACAAAGAAAACATCCATGAGGATTCTGATGTCACCCAATTGGAAAGTAATGGCAAAAGAAATACTGGATCAGGTAAAGGAGATAACGGCAAGGATTCAAATGTATCCCCTTTGGAAAAAAGTGGAAAAAAGTTTACTAGATCATCGGGGCGTAAAACCAGGGCTAATAAATCTGAAGATAAAGCAGCTAACGGCGAGGATTCCGGCGTCTCCCAGTTGGAAACAAGTGGCAAAAGAACTACAAGATCAGGAAGTAAAGATGTTTAA 933 44.27 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQPLDISSLSVRRSSRFADKPPPSYKEEPIEPLACLRRTYQRRDLLNRVYASDVERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKAHLPLEDEMLTLVDEDENEFQTKYLAEKTGLSGGWRGFSIDHQLVDGDTLVFQLNKPTEFKVYIIRAYNLEDKENIHEDSDVTQLESNGKRNTGSGKGDNGKDSNVSPLEKSGKKFTRSSGRKTRANKSEDKAANGEDSGVSQLETSGKRTTRSGSKDV 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6650761 6653614 - CmaCh19G006100.1 Cma19g00610 315298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00610 310 SUPERFAMILY DNA-binding pseudobarrel domain 121 218 IPR015300 -
Cma19g00610 310 MobiDBLite consensus disorder prediction 237 265 - -
Cma19g00610 310 MobiDBLite consensus disorder prediction 31 56 - -
Cma19g00610 310 MobiDBLite consensus disorder prediction 230 310 - -
Cma19g00610 310 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Cma19g00610 310 MobiDBLite consensus disorder prediction 32 56 - -
Cma19g00610 310 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677
Cma19g00610 310 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 231 IPR044837 -
Cma19g00610 310 Gene3D - 104 221 IPR015300 -
Cma19g00610 310 Coils Coil 6 33 - -
Cma19g00610 310 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 2 231 - -
Cma19g00610 310 SMART B3_2 128 219 IPR003340 GO:0003677
Cma19g00610 310 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01757 Cma19g00610 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00527 Cma-Chr12:2734249 Cma19g00610 Cma-Chr19:6650761 2.89E-64 dispersed
Cma12g00528 Cma-Chr12:2739439 Cma19g00610 Cma-Chr19:6650761 5.75E-71 dispersed
Cma19g00610 Cma-Chr19:6650761 Cma09g00197 Cma-Chr9:818210 3.00E-08 dispersed
Cma11g01757 Cma-Chr11:11718981 Cma19g00610 Cma-Chr19:6650761 6.34E-126 wgd
Cma19g00610 Cma-Chr19:6650761 Cma04g00497 Cma-Chr4:2552020 1.33E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36897 PF02362 B3 1.30E-15 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00610 - - cmax:111471078 600.127