Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00612 ATGGAGAAATCTGTTCTTCTCCGTTCTCTCACCTGTTCCTCTTTGGTATGCAACAGAATCTTTTTCCGTTCGGCTCACAGGTTGTCTCGCTCTACATTGCCGCCATCTTCGTCGTTTGTTCCGAGGAAGTTACACCGTCTCAATTCACTGCCTCGTCGTCATTTGAGATTACTTCCGGCTTATTCGCCTTCTCGTCCGCTTCACTTCAGACAGAAGTTCTCGTCTCTGGCTCCGCGTGCTGTTGCTGCTTCCCCTCCTCACTCCCCTCCAGAGTTTGCAGAAGTGTCTGATGAGGTTGCGGAGAAGCTTGGATTCGAGAAGGTCTCTGAGGAATTTATTGGTGAGTGCAAGTCAAAAGCTGTGCTTTTTAGACATAAGAAGACTGGTGCGGAGGTGATGTCCGTGTCGAATGATGATGAGAATAAGGTCTTTGGAATTGTTCTCCGTACACCACCGAATGATTCTACTGGAATTCCACACATATTAGAACACAGTGTATTGTGTGGATCAAGGAAGTACCCAGTAAAGGAGCCTTTTGTTGAATTATTGAAAGGAAGCTTACATACATTCTTAAATGCATTTACATATCCTGATAGGACATGCTACCCAGTTGCTTCAACAAATACAAAGGATTTTTATAATCTTGTTGATGTATACTTGGATGCGGTCTTCTTTCCTAAGTGCGTGGAGGACTTTAAGACGTTTCAACAAGAGGGATGGCATTATGAACTAAATGATCCATCAGAAGACATATCTTATAAAGGGGTGGTGTTCAATGAAATGAAAGGAGTTTACTCCCAGCCTGACAATATCCTAGGACGAGTTACTCAGCAGGCTCTTTTTCCTGACAATACATATGGAGTTGATAGTGGAGGTGACCCACGAGTTATTCCCAAGCTTACATTTGAGGAATTCAAGGAATTTCACCGTAAGTTTTACCACCCAGGAAATGCAAGGATTTGGTTTTATGGAGATGATGATCCAGTTGAACGACTGCGTATTCTCAAAGAGTATCTAGACATGTTTGATGCTAGTCCAGCATCCAACCAATCTAAGATTGAGCAACAAAGGCTATTCTCAGAGCCGGTTAGGATTGTTGAAAAGTATCCTTCTGGTGATGAAGGTGATTTGAAGAAAAAACATATGGTCTGTGTTAATTGGTTGCTTTCTGAAAAGCCCTTGGACTTGGAAACTGAGCTTACTCTTGGGTTTTTGGACCATCTTATGCTGGGAACTCCTGCTTCTCCACTGAGGAAAATCTTACTGGAGAGTGGTCTAGGAGAGGCCATTGTTGGTGGTGGGATTGAAGATGAGCTCTTACAACCACAGTTTAGTATTGGATTGAAGGGTGTTTTGGACGATGACATTCCAAAAGTAGAAGAATTAATTCTAAATACATTTAAGAAATTAGCAGAGGAAGGTTTTGACAATGATGCCGTAGAGGCTTCCATGAATACCATTGAGTTTTCCCTGCGGGAAAACAATACTGGATCTTTCCCTCGAGGCTTGTCACTTATGCTTCGATCCATTGGTAAATGGATATATGATATGAATCCATTTGAACCATTGAAGTATGAAGAGCCTTTGAAGGCCTTGAAAGCCAGAATAGCTGCGGAAGGACCCAAAGCTGTTTTTTCTCCTTTGATAGAGAAATTCATCTTGAACAATCCTCACCGAGTAACTATTGAGATGCAGCCTGATCCAGAGAAAGCTTCTCGTGATGAAGCAGCTGAAAAACAAATCTTGCAGAAAGTTAAGGAAAGCATGACGGAAGGAGATCTTGCTGAACTAGCACGTGCTACACAGGAATTACGGCTGAAGCAGGAAACACCTGATCCACCAGAAGCTTTAAAATGTGTCCCATGCCTTTGCCTTGAAGATATTCCTAAAGAACCTATTCGTATTCCATCAGAGATTGTTAATGTCAATGGAGTAACCGTCTTACAACATGAACTCTTCACAAATGATGTTCTTTATTCTGAAGTTGTTTTTGATATGAGTTCACTGAAGCAGGAGCTTCTTCCTTTGGTACCCTTATTTTGTCAATCATTGTTAGAGATGGGCACAAAAGACTTGACTTTTGTGCAACTTAATCAGTTAATTGGAAGGAAAACTGGTGGGATATCAGTTTATCCATTTACATCATCTATACGTGGCAATGACAAGGCATGTACTCATATGATTGTCAGAGGCAAGGCTATGTCAGGATGTGCTGAAGACTTATTCAACCTGATGAACTGCATTCTTCAAGAAGTACAGTTTACAGATCAGCAACGGTTTAAACAGTTTGTATCTCAGAGCAAATCACGAATGGAGAATCGGTTAAGAGGTAGTGGTCATGGAATTGCTGCTGCTAGGATGGATGCGAAGTTGAACAGTGCTGGGTGGATCTCTGAACAAATGGGTGGTCTCAGTTATCTGGAATTTCTGCGAACTCTTGAAGAGAAAGTTGATCAAAACTGGGCTGAAGTTTCTTCATCACTTGAGGAAATCCGCCAATCCTTACTTTCAAGGAAAAATTGCCTAGTCAACATTACTGCTGATGGCAAAAACCTCACAAATTCGGAGAAGTTCATTGGCAAATTTCTTGATTTGCTTCCTAATGAACCTGTCATTAAGAACAGCTCTTGGAATGCTCGGCTTTCTTCAGATAATGAAGCCATATTGATACCTACTCAGGTAAATTACGTTGGAAAAGCAGCTAACATTTATGAAACTGGCTATCAACTTAATGGAAGTGCCTATGTTATTTCAAAATATATTAGTAATACTTGGCTATGGGACCGTGTTAGAGTAAGTGGAGGTGCTTATGGAGGGTTTTGTGATTTTGATACTCATTCAGGAGTATTCTCCTTTTTATCTTATCGTGACCCAAATTTGTTAAAGACACTTGATGTATATGATGGAACTGTTGATTTTCTACGTGAATTGGAATTGGATAACGATACTCTAGCAAAAGCCATAATTGGAACGATTGGAGATGTTGACTCATACCAGCTTCCTGATGCTAAAGGTTATAGTAGCTTGTTGCGTCATTTGTTGGGAATTACAGAAGAGGAAAGGCAAAGGAGAAGGGAAGAGATTTTATCAACCAGCTTGAAGGACTTCAAGAACTTCGCCGACGCACTCGAGGCAGTCAGAAACAAAGGAGTGGTAGTTTCAGTTGCATCTCCCGAAGATGTCGAAGCTGCACACAACGAACGCCCTGGCTTTTTCCAAGTGAAGAAAGCCCTCTAA 3237 41.4 MEKSVLLRSLTCSSLVCNRIFFRSAHRLSRSTLPPSSSFVPRKLHRLNSLPRRHLRLLPAYSPSRPLHFRQKFSSLAPRAVAASPPHSPPEFAEVSDEVAEKLGFEKVSEEFIGECKSKAVLFRHKKTGAEVMSVSNDDENKVFGIVLRTPPNDSTGIPHILEHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDFKTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRVTQQALFPDNTYGVDSGGDPRVIPKLTFEEFKEFHRKFYHPGNARIWFYGDDDPVERLRILKEYLDMFDASPASNQSKIEQQRLFSEPVRIVEKYPSGDEGDLKKKHMVCVNWLLSEKPLDLETELTLGFLDHLMLGTPASPLRKILLESGLGEAIVGGGIEDELLQPQFSIGLKGVLDDDIPKVEELILNTFKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDMNPFEPLKYEEPLKALKARIAAEGPKAVFSPLIEKFILNNPHRVTIEMQPDPEKASRDEAAEKQILQKVKESMTEGDLAELARATQELRLKQETPDPPEALKCVPCLCLEDIPKEPIRIPSEIVNVNGVTVLQHELFTNDVLYSEVVFDMSSLKQELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSIRGNDKACTHMIVRGKAMSGCAEDLFNLMNCILQEVQFTDQQRFKQFVSQSKSRMENRLRGSGHGIAAARMDAKLNSAGWISEQMGGLSYLEFLRTLEEKVDQNWAEVSSSLEEIRQSLLSRKNCLVNITADGKNLTNSEKFIGKFLDLLPNEPVIKNSSWNARLSSDNEAILIPTQVNYVGKAANIYETGYQLNGSAYVISKYISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSFLSYRDPNLLKTLDVYDGTVDFLRELELDNDTLAKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGITEEERQRRREEILSTSLKDFKNFADALEAVRNKGVVVSVASPEDVEAAHNERPGFFQVKKAL 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6663413 6675705 - CmaCh19G006120.1 Cma19g00612 315300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00612 1078 Gene3D - 596 1050 - -
Cma19g00612 1078 Gene3D - 86 348 - -
Cma19g00612 1078 SUPERFAMILY LuxS/MPP-like metallohydrolase 104 346 IPR011249 GO:0046872
Cma19g00612 1078 PANTHER PRESEQUENCE PROTEASE 1, CHLOROPLASTIC/MITOCHONDRIAL 56 1078 - -
Cma19g00612 1078 Gene3D - 631 880 - -
Cma19g00612 1078 SMART M16C_assoc_2 564 813 IPR013578 GO:0006508
Cma19g00612 1078 PANTHER PRESEQUENCE PROTEASE 56 1078 - -
Cma19g00612 1078 Pfam Insulinase (Peptidase family M16) 152 227 IPR011765 -
Cma19g00612 1078 SUPERFAMILY LuxS/MPP-like metallohydrolase 882 1058 IPR011249 GO:0046872
Cma19g00612 1078 SUPERFAMILY LuxS/MPP-like metallohydrolase 623 877 IPR011249 GO:0046872
Cma19g00612 1078 Gene3D - 349 587 - -
Cma19g00612 1078 SUPERFAMILY LuxS/MPP-like metallohydrolase 356 621 IPR011249 GO:0046872
Cma19g00612 1078 Pfam Peptidase M16 inactive domain 299 486 IPR007863 -
Cma19g00612 1078 Pfam Peptidase M16C associated 564 813 IPR013578 GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00612 K06972 PITRM1, PreP, CYM1; presequence protease [EC:3.4.24.-] - csv:101206839 2039.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01760 Cma19g00612 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01760 Cma-Chr11:11729326 Cma19g00612 Cma-Chr19:6663413 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g436 . . . . . . . . Cmo19g00631 Cmo11g01352 . . . . Sed10g2040 Cpe04g00272 Cpe15g00496 Bhi05g01130 Tan02g0898 Cmetu01g1020 . Hepe02g0577 . . Cla02g00589 Cam02g0621 Cec02g0620 . Clacu02g0619 Cmu02g0614 . Cone12ag1102 . . . . Csa07g00770 . Cme01g00039 Blo04g00491 . . Bda14g00521 Bpe15g00893 . Bma03g00522 . . . . Cma11g01760 Cma19g00612 . Car19g00465 . . . . . . . . . . . . . . . . Lsi11g01018 . Chy01g00045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008932 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00612 Cma_Chr19 FPKM 9.328078 10.469672 21.579653 22.328947 65.004494 63.792355 71.657181 12.259288 11.862977 13.49286