Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00613 ATGGCGGATGATCCCTCTTCATTGACCAAGGTCCCTAAGAAATCCCCATTGATGCTAAGGATGATTGTGTTGGTCTTTGCCATGGTCTGTGGTGTATTTATATGCACAGTTTGTCTAAAGCAAATTAGCACAAGTACAAAGGTCGGGTTGTTAAGAGTCCAGGTTGTTGACATGCCGTGTTCGAAGCCTACGATCGATCCTTCAGACGTTCCTTTTGTGCACTTTCCTAAACCTACAACATATAGCAGGGCTGAATGTGCTTGCCACCCGGTTCGATTTTTTGCCATTTTGTCGATGCAGAGATCGGGCAGTGGTTGGTTCGAGACGTTATTAAATAACCATACTAACATAAGTTCCAACGGAGAGATATTCTCGGTTAAAGTTAGGAGAAGTAATATATCAACCATTGTCGAAACGCTCGATAAAGTTTACAATCTGGACTGGTTTAGTAGTGCTTCGAAAAACGAGTGCACAGCAGCTGTTGGCCTTAAGTGGATGCTTAATCAGGGGTTGATGCAGCACCATGTAGAAATAGTAGAGTACTTCAAACGTCGTGGCGTTTCAGCTATCTTCCTATTCCGACGAAACCTTCTTCGCAGAATGATCTCAGTACTTGCAAATTCATACGACCAAGCCGCGAAGCTGTTGAACGGAACCCACAAGTCTCACGTGCATTCACATCACGAGGCAGATATACTCGCAAAATACAAGCCTGTAATTAATGCCACTCTGTTGATACCCAATTTGAGGCAAGTAGAAGAGACAACAGCTAAAGCTTTGGAGTACTTCAATAGCACCCGACACATTGTGTTGTATTACGAAGATGTAGTTAGGAACCGCACCAAATTAAGTGATGTTCAGGACTTTCTGAAGGTTCCACGGAGGAAGTTGAAGAGTCGTCAAGTGAAGATACACCGAGGTCCATTGTCGAATCAAATCGAGAACTTGGAGCACGTCGAGAAGGCATTAAATGGAAGCCAGTATGAGAGTTTTTTACACGCAGACTTTCGGAAGTAA 1017 43.66 MADDPSSLTKVPKKSPLMLRMIVLVFAMVCGVFICTVCLKQISTSTKVGLLRVQVVDMPCSKPTIDPSDVPFVHFPKPTTYSRAECACHPVRFFAILSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRSNISTIVETLDKVYNLDWFSSASKNECTAAVGLKWMLNQGLMQHHVEIVEYFKRRGVSAIFLFRRNLLRRMISVLANSYDQAAKLLNGTHKSHVHSHHEADILAKYKPVINATLLIPNLRQVEETTAKALEYFNSTRHIVLYYEDVVRNRTKLSDVQDFLKVPRRKLKSRQVKIHRGPLSNQIENLEHVEKALNGSQYESFLHADFRK 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6677721 6681351 + CmaCh19G006130.1 Cma19g00613 315301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00613 338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 296 IPR027417 -
Cma19g00613 338 Gene3D - 91 319 IPR027417 -
Cma19g00613 338 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 8 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00613 - - - csv:101207076 624.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01761 Cma19g00613 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01761 Cma-Chr11:11749711 Cma19g00613 Cma-Chr19:6677721 0 wgd
Cma19g00613 Cma-Chr19:6677721 Cma07g00711 Cma-Chr7:3132250 7.34E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g446 . Blo15g00732 Bda06g01046 Bda08g00847 Bpe07g00394 Bpe12g00059 . Bma12g00468 Cmo19g00632 Cmo11g01351 . . . . Sed10g2042 Cpe04g00271 Cpe15g00497 Bhi05g01131 Tan02g0894 Cmetu01g2176 . Hepe02g0576 . . Cla02g00588 Cam02g0620 Cec02g0619 Cco02g0636 Clacu02g0618 Cmu02g0613 Cre02g0944 Cone12ag1104 Cone8ag1144 . . . Csa07g00771 . Cme01g00038 . Blo13g00571 Bda15g00032 . . . . Bma08g00797 . . . Cma11g01761 Cma19g00613 . Car19g00466 . . . . . . . . . . . . . . . . Lsi11g01019 . Chy01g00044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003442 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 5 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00613 Cma_Chr19 FPKM 8.336197 8.221374 8.744113 8.752725 9.336431 10.854922 9.859767 5.562628 5.40294 4.868671