Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00616 ATGACTGAGTATTGGGTTAGCCAAGGTAACAAATGGTGCGACTTCTGCAAAATATTTATTTCAAATAATCCTTCCACAATCCGGAATCATGAGCTCGGAGAACGTCATAAGGACAATGTTGCCAAAAGGCTTGCAAACATGAGAAAAGAGAATGCTGCCAAGGACAAGGAACAAAAGGAAGCAGTACGCGCGGTTGAGCAAATTGAGGCATACTGCAAAGGAACCAAGCTGTTTACATGCATCCTAACCTTTAGCTCAACGAAGAAAGCTAAGCGTAGTTATCAGAAGGACATAGCAAATTTCCGGGAAGCTAGAGATTCTCATGCACTTCCTGTTGATGTTCAAGAAAATGAAGAGAAATGGGAGCTTGACAGCACTACAGGCTATTATTACAATGAAAGCAATGGTTTTTACTATGACTCAAATTCCGGCTTCTACTACTCTGATGCTATTGGCAAGTGGGTAACACAGGAAGAGGCACATGCTTCGCCTCAGTTTTTCTTGAACTCCAAACATAAGAAACCAGTTTTAGAGAACCCATCGTCGGCCTCTGCAAGTGCAGCTACAAAAGACAAAAATGTGGATAAAGGGGAAAGCGGGCCTCCGCCTGGGTTGGTTGTTTCAGCTTCTTCAAAACCCAAGCGATCGGTTAAAGGTGCTCCTTCATCGATTGCTGTTGGTAAGAGGAAGAGGCCAAATGAGAAGCAAAAGGTCATATCTGAAGAAGAAAAGGCTGCACTTAAAGCAAGGGAGGCTGCAAAGAAGAGAGTTGAACAGAGGGAGAAGCCACTTCTCGGCCTTTACAAATTGCCTTGA 816 43.75 MTEYWVSQGNKWCDFCKIFISNNPSTIRNHELGERHKDNVAKRLANMRKENAAKDKEQKEAVRAVEQIEAYCKGTKLFTCILTFSSTKKAKRSYQKDIANFREARDSHALPVDVQENEEKWELDSTTGYYYNESNGFYYDSNSGFYYSDAIGKWVTQEEAHASPQFFLNSKHKKPVLENPSSASASAATKDKNVDKGESGPPPGLVVSASSKPKRSVKGAPSSIAVGKRKRPNEKQKVISEEEKAALKAREAAKKRVEQREKPLLGLYKLP 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6688861 6693063 - CmaCh19G006160.1 Cma19g00616 315304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00616 271 ProSiteProfiles Zinc finger matrin-type profile. 11 42 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cma19g00616 271 SMART ZnF_U1_5 8 43 IPR003604 GO:0003676|GO:0008270
Cma19g00616 271 Coils Coil 37 57 - -
Cma19g00616 271 MobiDBLite consensus disorder prediction 252 271 - -
Cma19g00616 271 SUPERFAMILY beta-beta-alpha zinc fingers 12 57 IPR036236 -
Cma19g00616 271 Pfam OCRE domain 118 166 IPR041591 -
Cma19g00616 271 PANTHER WW DOMAIN BINDING PROTEIN 4 1 263 IPR040023 GO:0000398
Cma19g00616 271 Gene3D Classic Zinc Finger 9 63 - -
Cma19g00616 271 MobiDBLite consensus disorder prediction 177 240 - -
Cma19g00616 271 Pfam U1 zinc finger 11 43 IPR013085 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00616 K13220 WBP4, FBP21; WW domain-binding protein 4 - qsu:112004220 354.755
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g451 . . . . . Bpe12g00060 . . Cmo19g00635 . . . . . Sed10g2044 . Cpe15g00499 Bhi05g01134 Tan02g0890 Cmetu01g0261 . Hepe02g0574 . . Cla02g00585 Cam02g0618 Cec02g0617 Cco02g0633 Clacu02g0615 Cmu02g0611 Cre02g0942 Cone12ag1107 Cone8ag1147 . . . Csa07g00774 . Cme01g00036 . Blo13g00570 Bda15g00031 . . . . Bma08g00796 . . . . Cma19g00616 . Car19g00469 . . . . . . . . . . . . . . . . Lsi11g01021 . Chy01g00042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008813 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00616 Cma_Chr19 FPKM 7.21547 9.827377 8.696922 10.418837 8.387424 9.449039 10.262107 10.350813 10.427552 11.1699