Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00623 ATGGGTTCTGTTTCGGATTTTCAACCCAAAACGATCACTGATTTCCTCCGTCAGATTTCGATGCTTACGAATGCCGCCGATCGGACTTCGAAACTCGATGATCTTGTGAAGAACTTGCAGGATGAAATGAAGAAGATCGATGCCTTCAAGCGGGAGCTTCCCTTCTGTATGCTTCTATTGAACGATGCGATCCTTGCTTTGGGTAAGCCCAAACTGGTTCTGGAGGAATTCTTGTCATTGAACAGAGATTCTTCTGATGAGGAGGAGAAGGAACAGGATTGTGGAGATAAGAAGGAATGGATGAGCTCTGTTCAGCTATGGAAGACTGATCAGTTGCCGAACGCCCAAATCAAAACTAAGAGAAATGAGGGATGGGGTTATTTAGCTGCTGCAAACAAGAATGAAGAGAGATTGTTTGTTGGTTTAAAGTCATGTTCTGCTGTGAAGAAGGAAGAGAAGATTGAATCTCCCATTTGTGCACTTTCCTTGGTTACTCCCAGCTTGAAGAATCCTAGAGAAGAGTTAGTTTCCTGTGTTTTGCGGTCGAGTGGAAACCAAGCAAGTTCAACCTCTTTTGCTGATATACGGTCGAATCTACGGACGGTGTTGCCTCAGCAGCAGTCGCCTGCTCGGAAGCAGAGGAGGTGCTGGTCGCCAGAATTGCATCGGCGGTTCGAGAATGCCTTGCAGCAACTTGGAGGTTCACAAGTCGCAACCCCAAAGCAAATAAGAGAACTGATGCAGGTAGATGGCCTAACCAATGATGAAGTAAAAAGCCATTTACAAAAATACCGTCTTCATACTCGGCGAGTACCATCGACACCAGCTGCCCGAGCAGCAGACCAATCTCCAGTTGTTCTAGGAGATTTAAGGATGTCCCAAGATGGGTGTGGTGAATCCTCAAAGGTGAGCAGCTCGCAGTCAGCCTCACCACAAGGTCCGCTCCAGTTCAATGTGAATGGAGGGTATTCCACGACCAGAGGCGACGGCATGGAGGACGAGGAAGATACTAAATCCGAGAGCTATGGGTACTGA 1035 47.34 MGSVSDFQPKTITDFLRQISMLTNAADRTSKLDDLVKNLQDEMKKIDAFKRELPFCMLLLNDAILALGKPKLVLEEFLSLNRDSSDEEEKEQDCGDKKEWMSSVQLWKTDQLPNAQIKTKRNEGWGYLAAANKNEERLFVGLKSCSAVKKEEKIESPICALSLVTPSLKNPREELVSCVLRSSGNQASSTSFADIRSNLRTVLPQQQSPARKQRRCWSPELHRRFENALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSTPAARAADQSPVVLGDLRMSQDGCGESSKVSSSQSASPQGPLQFNVNGGYSTTRGDGMEDEEDTKSESYGY 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6734560 6737275 - CmaCh19G006230.1 Cma19g00623 315311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00623 344 MobiDBLite consensus disorder prediction 297 325 - -
Cma19g00623 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 267 IPR006447 GO:0003677
Cma19g00623 344 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Cma19g00623 344 Coils Coil 22 52 - -
Cma19g00623 344 PANTHER TRANSCRIPTION FACTOR HHO6 7 343 - -
Cma19g00623 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 343 IPR044787 GO:0003700|GO:0006355
Cma19g00623 344 Gene3D - 211 269 - -
Cma19g00623 344 MobiDBLite consensus disorder prediction 270 344 - -
Cma19g00623 344 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Cma19g00623 344 MobiDBLite consensus disorder prediction 328 344 - -
Cma19g00623 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 269 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00623 - - - csv:101221044 522.316
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00623 Cma20g00887 CCT
Cma11g01767 Cma19g00623 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00623 Cma-Chr19:6734560 Cma04g01522 Cma-Chr4:7701261 7.32E-36 dispersed
Cma11g01767 Cma-Chr11:11829593 Cma19g00623 Cma-Chr19:6734560 3.08E-178 wgd
Cma19g00623 Cma-Chr19:6734560 Cma20g00887 Cma-Chr20:4264375 6.85E-103 wgd
Cma19g00623 Cma-Chr19:6734560 Cma07g00721 Cma-Chr7:3181175 3.80E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g468 . Blo15g00726 Bda06g01033 Bda08g00828 Bpe07g00396 Bpe12g00065 . Bma12g00476 Cmo19g00641 Cmo11g01344 . Cma20g00887 . Car20g00764 Sed10g2052 Cpe04g00264 Cpe15g00505 Bhi05g01152 Tan02g0881 Cmetu01g1216 . Hepe02g0566 . . Cla02g00577 Cam02g0608 Cec02g0608 Cco02g0623 Clacu02g0604 Cmu02g0602 Cre02g0932 Cone12ag1112 Cone8ag1154 Cone3ag1117 Cone10ag1128 Lsi10g00313 Csa07g00784 Chy11g00433 Cme01g00026 . Blo13g00566 . Bda14g00523 . . Bma03g00524 . Sed01g0333 . Cmo20g00894 Cma11g01767 Cma19g00623 Car11g01081 Car19g00475 . . Bhi10g02074 Tan05g1390 Cmetu11g1909 . Hepe08g1062 . . Cla09g01716 Cam09g1810 Cec09g1872 Cco09g1965 . . Cre01g0695 Lsi11g01029 Csa02g01203 Chy01g00032 Cme11g00507
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001343 4 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36898 PF00249 Myb_DNA-binding 8.60E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00623 Cma_Chr19 FPKM 7.15276 8.890857 12.481461 15.230645 4.478451 3.840748 4.401704 25.980532 26.845301 25.382858