Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00626 ATGAAGGAGTTTGATCAGGCCTTCATCCAAGCCCCGGAGCACCGCCCCAATCTCTCCGCCGCTGAATCCGACTGCATCCCTACCATCGACCTCTCTCCGATCTTCAACTCCCCCGACGGTACCTTCCCCGACGATTTGGTCCGACAAATTGCCTCTACTTCCATAGACTGGGGATTCTTTCTTGTGGTCAACCACGGCGTCCCCGCCGAGAAGCGGCAGAGGATGGAGGCCGCTTCTCGGGAGTTTTTCCGGCGGAGTTTGGAAGAGAAGAGAACAGTGATGAAAGAGGAAGGGATGGTCACTGGCTATTCCGATATGGAACTCACCAAGAACGTCAGAGATTGGAAAGAGGTCTTCGATTTCATTGTGGCCGATCCCACCGTCGTCCCCGTGTCGCCCGAGCCTAATGATCATCGGTTGACTCACTGGACCAATCAATGGCCGACATACCTACCAGAATTCAGAGAGGCTGGTAAGGAATATGCCGAAGAATTAGAGAAACTTGGCCACAAGTTAGTAGAACTGATCGCAGTTAGCTTGGGATTACCGGCACAAAGGTTTCGAGATTATTTCAAAGAGAAAACAAGTATGGTGAGACTGAATCATTATCCTCCATGCTCGTTGCCAGAAATGGCTCTCGGTGTGGGTCGCCACAATGACCCTGGTGTCTTGACGATGCTTGTCCAAGACGATGTCGGAGGGCTAGAAGTGAAAAGGAAAAGAGATGGAGAGTGGATTCGGGTCAAACCCGTACCCGATTCTTATGTCGTTAATATTGGCAATGTTACTCAGGTTTGGAGCAATGACAGGTACGAGAGCGTGGAGCATAGGGTTGTGGTAAACGACAAAAAGGAAAGGTATTCCATTGCGTTCTTCTTCAACCCATCTCATTCCACCATTGTCGAACCTTTGGAAGAACTCATCGATCCCAAAAACCCTCCGAAATACCAGTCGTACTTATGGGGGAAGCTAGCTCGTATGTTAAATGAGTCGTCGTTTATGCTACTCTACCACGAGCCGTTTGGTTTAGGGTTTGATTGGCTGCTTGTGGATAACGTGTATGTTTGGTTGAATAACGTTATTGGGAAGATCATATGTTGTGTGTGTGTATATAATTAA 1119 48.61 MKEFDQAFIQAPEHRPNLSAAESDCIPTIDLSPIFNSPDGTFPDDLVRQIASTSIDWGFFLVVNHGVPAEKRQRMEAASREFFRRSLEEKRTVMKEEGMVTGYSDMELTKNVRDWKEVFDFIVADPTVVPVSPEPNDHRLTHWTNQWPTYLPEFREAGKEYAEELEKLGHKLVELIAVSLGLPAQRFRDYFKEKTSMVRLNHYPPCSLPEMALGVGRHNDPGVLTMLVQDDVGGLEVKRKRDGEWIRVKPVPDSYVVNIGNVTQVWSNDRYESVEHRVVVNDKKERYSIAFFFNPSHSTIVEPLEELIDPKNPPKYQSYLWGKLARMLNESSFMLLYHEPFGLGFDWLLVDNVYVWLNNVIGKIICCVCVYN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6758376 6759836 - CmaCh19G006260.1 Cma19g00626 315314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00626 372 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 2 333 - -
Cma19g00626 372 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 149 IPR026992 -
Cma19g00626 372 SUPERFAMILY Clavaminate synthase-like 4 327 - -
Cma19g00626 372 Gene3D - 1 331 IPR027443 -
Cma19g00626 372 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 295 IPR005123 -
Cma19g00626 372 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 2 333 - -
Cma19g00626 372 Pfam 2OG-Fe(II) oxygenase superfamily 196 295 IPR044861 -
Cma19g00626 372 PRINTS Isopenicillin N synthase signature 50 67 - -
Cma19g00626 372 PRINTS Isopenicillin N synthase signature 218 239 - -
Cma19g00626 372 PRINTS Isopenicillin N synthase signature 283 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00626 - - - csv:101209423 505.368
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01775 Cma19g00626 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00626 Cma-Chr19:6758376 Cma14g01630 Cma-Chr14:12197296 4.02E-58 dispersed
Cma19g00626 Cma-Chr19:6758376 Cma19g00627 Cma-Chr19:6761115 1.25E-92 tandem
Cma05g01365 Cma-Chr5:10281149 Cma19g00626 Cma-Chr19:6758376 2.49E-27 transposed
Cma16g01123 Cma-Chr16:8630870 Cma19g00626 Cma-Chr19:6758376 6.09E-38 transposed
Cma11g01775 Cma-Chr11:11868700 Cma19g00626 Cma-Chr19:6758376 7.49E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g477 . . . . . . . . Cmo19g00644 . . . . . . . Cpe15g00508 Bhi05g01158 . . . Hepe06g0397 . . . . . . . . . . . . . . Csa07g00790 . . . . . Bda14g00528 . . . . . . . Cma11g01775 Cma19g00626 . Car19g00478 . . . . . . . . . . . . . . . . Lsi11g01036 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00626 Cma_Chr19 FPKM 128.722778 146.701248 414.679047 409.343201 5.000539 4.568889 3.874871 2.295926 1.860048 2.221778