Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00627 ATGGATGATTTCGATCAGGCCTTCATCCAAGCCCCCGAGCACCGCCCCAAGCTCTCCGACCCCGAAGCCGACGGCATCCCCACCGTCGACCTCTCTCCGATCTTCAACTCCCCCGACGGTACCTTCCCCGACGATTTGGTCCGACAAATTGCCTCTACTTCCATAGACTGGGGATTCTTTCTTGTGGTCAACCACGGCGTCCCCGCCGAGAAGCGGCAGAGGATGGAGGCCGCTTCTCGGGAGTTTTTCCGGCGGAGTTTGGAAGAGAAGAGAACAGTGATGAAAGTGGAAGGGATGGTCACTGGCTATTCCGATATGGAACTCACCAAGAACGTCAGAGATTGGAAGGAGGTCTTCGATTTCATTGTGGCCGATCCCACCGTCGTCCCCGTGTCGCCCGAGCCTAATGATCATCGGTTGACTCACTGGACCAATCAATGGCCGACATACCTACCAGAATTCAGAGAGGCTGGTAAGGAATATGCCGAAGAATTAGAGAAACTTGGCCACAAGTTAGTAGAACTGATCGCAGTTAGCTTGGGATTACCGGCACAAAGGTTTCGAGATTATTTCAAAGAGAAAACAAGTATGGTGAGACTGAATCATTATCCTCCATGCTCGTTGCCAGAAATGGCTCTCGGTGTGGGTCGCCACAATGACCCTGGTGTCTTGACGATGCTTGTCCAAGACGATGTCGGAGGGCTAGAAGTGAAAAGGAAAAGAGATGGAGAGTGGATTCGGGTCAAACCCGTACCCGATTCTTATGTCGTTAATATTGGCAATGTTACTCAGGTTTGGAGTAATGACAGGTACGAGAGCGTGGAGCATAGGGTTGTGGTAAACGACAAAAAGGAAAGGTATTCCATTGCGTTCTTCTTCAACCCATCTCATTCCACCATTGTCGAACCTTTGGAAGAACTCATCGATCCCAAAAACCCTCCGAAATACCAGTCGAGGGCTTGCGAGGAATATGTTGAAGAATTGGAAAAGCTTGGCCACAAATTAATGGAATTGCTCGCCGTTAGCTTGGGATTACCGGCGGAGAGATTTCGAGATTATTTCAAAGAGACGACAAGTTTTGGGAGACTGAATCACTATCCGCCGTGCCCGTCGCCGGAGCTAGCTCTTGGCGTCGGCCGCCACAAGGACCCTGGCGTCTTGACGGTGCTTGCCCAAGACGACGACGTGGAAGGGCTGGAAGTGAAAAGGAAGAGAGATGGAGAGTGGATTCGGGTCAAACCCGTACCCGATTCATACGTTGTCAACGTCGGAGAAATTACTCAGGCTTGGAGCAATGAGAGGTACGAGAGCGTGGAACATCGAGCTATGGTTAACCACAAAAAGGAAAGATATTCCATTGCCTTCTTCTTCAACCCATCTCACTCCACCGTTGTCGAGCCTTTGAAAGAACTCATTACTCCCGAAAACCCTCCCAATTACAAATCTTACTCATGGGGGAAGTACCTTTCGAATAGAATGCTCAGTAACTTTAAGCAACTGAACGCCGACAACATTCAAGTTTCTCACTTTAAGATCTCCAATTAG 1545 49.71 MDDFDQAFIQAPEHRPKLSDPEADGIPTVDLSPIFNSPDGTFPDDLVRQIASTSIDWGFFLVVNHGVPAEKRQRMEAASREFFRRSLEEKRTVMKVEGMVTGYSDMELTKNVRDWKEVFDFIVADPTVVPVSPEPNDHRLTHWTNQWPTYLPEFREAGKEYAEELEKLGHKLVELIAVSLGLPAQRFRDYFKEKTSMVRLNHYPPCSLPEMALGVGRHNDPGVLTMLVQDDVGGLEVKRKRDGEWIRVKPVPDSYVVNIGNVTQVWSNDRYESVEHRVVVNDKKERYSIAFFFNPSHSTIVEPLEELIDPKNPPKYQSRACEEYVEELEKLGHKLMELLAVSLGLPAERFRDYFKETTSFGRLNHYPPCPSPELALGVGRHKDPGVLTVLAQDDDVEGLEVKRKRDGEWIRVKPVPDSYVVNVGEITQAWSNERYESVEHRAMVNHKKERYSIAFFFNPSHSTVVEPLKELITPENPPNYKSYSWGKYLSNRMLSNFKQLNADNIQVSHFKISN 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6761115 6764981 - CmaCh19G006270.1 Cma19g00627 315315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00627 514 Gene3D - 323 512 IPR027443 -
Cma19g00627 514 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 149 IPR026992 -
Cma19g00627 514 SUPERFAMILY Clavaminate synthase-like 4 326 - -
Cma19g00627 514 SUPERFAMILY Clavaminate synthase-like 320 497 - -
Cma19g00627 514 Pfam 2OG-Fe(II) oxygenase superfamily 196 295 IPR044861 -
Cma19g00627 514 Pfam 2OG-Fe(II) oxygenase superfamily 362 459 IPR044861 -
Cma19g00627 514 Gene3D - 1 322 IPR027443 -
Cma19g00627 514 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 321 504 - -
Cma19g00627 514 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 3 319 - -
Cma19g00627 514 PRINTS Isopenicillin N synthase signature 218 239 - -
Cma19g00627 514 PRINTS Isopenicillin N synthase signature 50 67 - -
Cma19g00627 514 PRINTS Isopenicillin N synthase signature 283 301 - -
Cma19g00627 514 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 356 459 IPR005123 -
Cma19g00627 514 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 295 IPR005123 -
Cma19g00627 514 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 321 504 - -
Cma19g00627 514 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE, NON-HEME DIOXYGENASE DOMAIN-CONTAINING PROTEIN-RELATED 3 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00627 - - - csv:101209423 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01775 Cma-Chr11:11868700 Cma19g00627 Cma-Chr19:6761115 7.77E-76 dispersed
Cma16g01123 Cma-Chr16:8630870 Cma19g00627 Cma-Chr19:6761115 3.62E-20 dispersed
Cma19g00627 Cma-Chr19:6761115 Cma14g01630 Cma-Chr14:12197296 5.20E-36 dispersed
Cma19g00626 Cma-Chr19:6758376 Cma19g00627 Cma-Chr19:6761115 1.25E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g481 . . . . . . . . Cmo19g00645 . . . . . . . Cpe15g00509 Bhi05g01160 . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00529 . . . . . . . . Cma19g00627 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000982 2 2 0 0 1 2 2 2 3 3 2 2 3 2 3 3 2 4 3 3 4 2 3 1 3 4 5 3 3 12 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00627 Cma_Chr19 FPKM 54.665905 59.265823 135.727463 130.918961 2.584519 2.359507 2.614864 1.005585 0.705604 1.000184