Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00630 ATGGAGGTCATGGCGACCGTGCAGGATCTGATCGAGGAAGCTAAACTTCGAACGGTTTGGTGGGCTCTGTGTACTTTCGTGATTTCGTACTTTTTGACCCATACTAGTAAGTCAATGTGGATGAATGTACCCCTAGCAATTCTATTAGTTTGTGCACTACGTATTCTATTCAACGAGGTAGAGTTCCATAGAAAGGTCCGACCTGTTCAGCGACAGACGTACTTATCGCATCTGGAGAAGAAACAATTATCTGTAAACGACTCGTCCCTTTCTTCAGTTCTTCATCCACCAAGATGGAAAAGGAAAATCAATTCTCCTACTGTGGAGGCTGCAATGAAGGATTTCATAGATAAAATACTGAAGGATTTTGTGGTTGACTTGTGGTATTCAGAAATAACCCCAGATAAAGAGTTTCCTGAGCAGATACACATGTTAATCATGGATGCCCTTGGTGAGATAGCGGTTAGGGTGAAAGAGATAAATCTTGTTGACTTGCTCACGAGGGATGTTGTTGTTTTAGTAGGTGATCACTTGGACCTTTTTAGAAGAAACCAAGCTTTGATCGGTGTTCATGTTATGGAAATGCTGTCTTCTGAGGAGAGAGACGAAAGGTTGAAGCACCATCTTATGGCTTCTAAGGAGCTTCATCCAGCATTGGTGTCTCCTGAGAGTGAGTACAAGGTCCTTCAACGGCTCATGAGTGGAGTGTTGACTTCAGTACTGAGACCAAGAGAAACTCAAAGCCCTGTTGTCCGATCCATTGCTCGTGAACTTTTAACATGCTTGGTGGTGCAACCTCTTATGAATTTTGCAAGTCCTGGGTGCATAAATGAGTTGATCGAATGTATTGTCCTTGCCACTAAAGCTGAGAATGACTCTGTGATAGGTGGTCAACAACCAACTTATTCTGCAGATAATGACAGAGACCATTCTTCTATTGCTGGATTCATACATGATGACTATTTGGACAAAAGTAAATGCTCATCTTTAACGCCTGGGAATGCTTCAGAGCTTGCTAAAATTGACAATCAGCGAGAAAGATCCTCAGATTACATGTTCCAGGACGAGCCTTTGCAACTTAGGCTTGGTGATTGGGGCCGTACATTGGATGCAGCAACCCAAAGGAGAACTGAAGTTCTTATGCCCGAAAATCTTGAAAACATGTGGACTAAAGGACGACACTACAAAAAGAAAGAAAATAAGATCATTAAAGGAGGAGATTTTGAGCCTATGGCTACTACGAAGGATTCTGGAACAAGTAGCATGCAGCCTGCAACAACGAGGGATGAAATGTTGACTGACAAGCATCATTCTTCTATTGGGCCAGAGGAAAAGGCAATAGCTGGGAGAACGCCCACAAGACATTCTGATCTCCTTTTGACCTCCAAATCAGGTGATGAGAACAAAATCAGTTTTCAGTTTTCTCTGGATCTTCAGAAGGATTCATCTGTCGACAAGAAGTTCATTGCTGATGAATTAAAGGATGTTGATAATCTTACTCCTGCTAGTAGAACTAAAAATCAACTCAAGAGATCCAATAGTACTTCTGCTTTGAAAACTGAATTTAGTGTAGAAAACACTTCTACAGAAGGTGGAACATCTATTATATCAGATTTCTACGGTCCCAATTTTGGCAAGCACGGTGAAGAGCTCCTTTCTAAGAGTGTCTCGGATACAGTGGTCCAAAACGAGGGACTACTTGTTCCTAAACTTAGGAGTCGGGTAATGGGTGCGTACTTTGAAAAGCTTGGTTCAAAATCTTTTGCTGTGTACTCAATAGCTGTTACAGATGCAAATAACAGAACTTGGTTTGTCAAGAGAAGATACCGAAATTTTGAGCGACTTCATCGGCATCTTAAAGATATTCCTAACTATACACTGCACCTGCCTCCCAAACGAATATTTTCATCAAGCACAGAAGATTCTTTTGTTCACCAACGTTGCATTCAACTAGACAAATATTTGCAGGAGCTATTATCAATTGCAAATGTTGCTGAGCAGCATGAAGTATGGGATTTTTTAAGTGTTTCCTCAAAGAACTATTCTTTTGGAAAATCTCCCTCAGTTATGAGAACACTAGCAGTCAATGTGGATGATGCTGTGGATGACATTGTACGCCAGTTTAAAGGGGTTTCAGATGGTTTCATGCGTAAAGTTGTTGGTTCAACCTCACCTTCTGAAGAAGCTTGTTTGTCATCAAATTATGATCGGAAGTTTTCATTTAATTCAGCAGACTTGCGCAAACAAGTTTCTGCACAATATAACTTAGAAATAGCTAGTAACATTTCTGACGAGGAAAGTGAGAGAACTGAAAGTCAAAATCGTGAAAAAGTTAGTGGATGGCATTCAGACAATGAATTAAACTCCAAGAGCTTTCCCCCTCGTGTAATCAAACGCGATGAAGAATCAAAGAAGTTAGTTGTTGACAAGAAAAATGACATAGAATTGAGGTCTGGGGCAAGCCAGGGAGGATGTTCACAAATTTCATATCATATGGAAGATCCAGAAGGAATGCCACCAGAGTGGACTCCACCTAATGTCAGTGTACCTATTCTAAATCTGGTTGACAAGATATTTCAGCTCAACAGGAGAGGCTGGCTAAGGAGGCAGGTCCTTTGGATATCAAAACAAATATTACAGTTAATTATGGAAGATGCTATTGATGACTGGATTGTTAGGCAAATACACTGGCTTCGGAGAGAGGACAATATTGCTCAGGGTATTCGCTGGGTCCAAAATGTTCTATGGCCCAATGGAATATTCTTCATACATTTGAGGAATGCTCAAAGTGAAGGTGATGATTCTCAATCTACTTCTAGCCAAACCGATGGAAGTAAGATCCCTAAGCCTGGATCTTTCGAGCTGCAGCTTGAGGCTGCTCGCCGAGCTAGTGATGTCAAGAAAATGCTTTTTGATGGGGCTCCAACACCATTGGTAAGCTTGATAGGGCATACGCAATACAAAAGATGCGCAAAAGATATCTATTACTTCACTCAGTCTACCATCTGTGTAAAGCAACTTGGGTATGGATTACTCGAACTATTACTTGTATCAGTTTTCCCTGAGCTACGGGATTTAGTAATGGAGATTCACGATAAGCCGCCACACGTCTCGGAACCAGTCTAG 3126 41.3 MEVMATVQDLIEEAKLRTVWWALCTFVISYFLTHTSKSMWMNVPLAILLVCALRILFNEVEFHRKVRPVQRQTYLSHLEKKQLSVNDSSLSSVLHPPRWKRKINSPTVEAAMKDFIDKILKDFVVDLWYSEITPDKEFPEQIHMLIMDALGEIAVRVKEINLVDLLTRDVVVLVGDHLDLFRRNQALIGVHVMEMLSSEERDERLKHHLMASKELHPALVSPESEYKVLQRLMSGVLTSVLRPRETQSPVVRSIARELLTCLVVQPLMNFASPGCINELIECIVLATKAENDSVIGGQQPTYSADNDRDHSSIAGFIHDDYLDKSKCSSLTPGNASELAKIDNQRERSSDYMFQDEPLQLRLGDWGRTLDAATQRRTEVLMPENLENMWTKGRHYKKKENKIIKGGDFEPMATTKDSGTSSMQPATTRDEMLTDKHHSSIGPEEKAIAGRTPTRHSDLLLTSKSGDENKISFQFSLDLQKDSSVDKKFIADELKDVDNLTPASRTKNQLKRSNSTSALKTEFSVENTSTEGGTSIISDFYGPNFGKHGEELLSKSVSDTVVQNEGLLVPKLRSRVMGAYFEKLGSKSFAVYSIAVTDANNRTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDSFVHQRCIQLDKYLQELLSIANVAEQHEVWDFLSVSSKNYSFGKSPSVMRTLAVNVDDAVDDIVRQFKGVSDGFMRKVVGSTSPSEEACLSSNYDRKFSFNSADLRKQVSAQYNLEIASNISDEESERTESQNREKVSGWHSDNELNSKSFPPRVIKRDEESKKLVVDKKNDIELRSGASQGGCSQISYHMEDPEGMPPEWTPPNVSVPILNLVDKIFQLNRRGWLRRQVLWISKQILQLIMEDAIDDWIVRQIHWLRREDNIAQGIRWVQNVLWPNGIFFIHLRNAQSEGDDSQSTSSQTDGSKIPKPGSFELQLEAARRASDVKKMLFDGAPTPLVSLIGHTQYKRCAKDIYYFTQSTICVKQLGYGLLELLLVSVFPELRDLVMEIHDKPPHVSEPV 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6773296 6784615 + CmaCh19G006300.1 Cma19g00630 315318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00630 1041 SMART PX_2 569 677 IPR001683 GO:0035091
Cma19g00630 1041 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 5 1040 - -
Cma19g00630 1041 ProSiteProfiles PXA domain profile. 105 288 IPR003114 -
Cma19g00630 1041 MobiDBLite consensus disorder prediction 763 783 - -
Cma19g00630 1041 Gene3D - 572 685 IPR036871 GO:0035091
Cma19g00630 1041 Pfam PX domain 600 676 IPR001683 GO:0035091
Cma19g00630 1041 Pfam Sorting nexin C terminal 866 1001 IPR013937 -
Cma19g00630 1041 PANTHER PX SERINE/THREONINE KINASE PXK 5 1040 - -
Cma19g00630 1041 SUPERFAMILY PX domain 577 680 IPR036871 GO:0035091
Cma19g00630 1041 MobiDBLite consensus disorder prediction 931 950 - -
Cma19g00630 1041 Pfam PXA domain 105 281 IPR003114 -
Cma19g00630 1041 CDD PX_SNX19_like_plant 571 675 - -
Cma19g00630 1041 ProSiteProfiles PX domain profile. 569 681 IPR001683 GO:0035091
Cma19g00630 1041 MobiDBLite consensus disorder prediction 931 947 - -
Cma19g00630 1041 MobiDBLite consensus disorder prediction 817 837 - -
Cma19g00630 1041 MobiDBLite consensus disorder prediction 504 525 - -
Cma19g00630 1041 SMART PXA_3 105 290 IPR003114 -
Cma19g00630 1041 MobiDBLite consensus disorder prediction 763 785 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00630 K17925 SNX13; sorting nexin-13 - csv:101222929 1716.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01777 Cma19g00630 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00697 Cma-Chr8:4277263 Cma19g00630 Cma-Chr19:6773296 2.63E-60 transposed
Cma11g01777 Cma-Chr11:11883242 Cma19g00630 Cma-Chr19:6773296 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g500 . . . . . Bpe12g00069 . . Cmo19g00647 Cmo11g01333 . . . . . Cpe04g00257 Cpe15g00511 Bhi05g01163 . . . Hepe02g0556 . . Cla02g00568 Cam02g0598 Cec02g0598 Cco02g0609 Clacu02g0594 Cmu02g0592 Cre02g0921 Cone12ag1120 Cone8ag1165 . . . Csa07g00810 . Cme01g00015 . . Bda15g00024 . . . . . . . . Cma11g01777 Cma19g00630 Car11g01074 Car19g00481 . . . . . . . . . . . . . . . . Lsi11g01041 . Chy01g00019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009346 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00630 Cma_Chr19 FPKM 3.010983 4.454094 2.341531 2.894627 2.79168 2.600138 2.754355 3.269517 2.578809 2.988775