Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00640 ATGGAATTTTTTCTCGAAGAAGGAAAGCAAGTTCATGGCAAGAGCTCCACTCTGATTCTGCCAGCATTGTCAATTGGGAATGTGGGGCAGTTAGCAGTGGACCTGTTGGTTTCCACAATGAGTGCAACAAGAATTGGTTATTTGGATGACCCTTTTGTTCTGCCTTGTATTGGTAATAATGCTTATGAGCCATTTCCCCATGGGGAGCTTGCCCTCCCTCTTGAAGTTTATGAATCAACATCTAATGCAGTGACCCTTGTCCAGCAAAGGTCACCTGTTATCAAGGGGAAAATGGTCGATTTTGCAAAGAACTTGGCTGATTTTATTGCAACTTATGGGAAGATGCATGTTGTTCTGCTTTCTAGCTTAGATTTTGGAAGGTGGCAACAAATTGATACGTCAAGTGGCTCGCAGATTCATTATCTTTCTAGCACCAATGATGACGGAACTGATGACAAGTGTGAACAAATGGGATGGAGAAGGCTGCAGGAATACGACCCACAGCAGCGACGATGGAAATATCTTAGCACGTTAACTGAAGCCAAGGCTACCCCGGAGGATGACCTGCCTTTTGATGAGGAGTTGGAGGAGGGAGACTACCTCCCAAGTCTACCATTTGCCTCTCTCTTTACTTTTTTGAAGGCCAAAGGTGTGAAGGTCACCTGCTTATTTTGTTATTGTTCAGAAGGAGACAACATAGCTGATGCTTTCAATTTGGCTGAGGCAACGGGCAAACTTCTGGGTCTGAGTCCCGGTGGCGAAGGCATTCAATGGCAAGTCCCGTTTTCTTGGAAGTCTGTTTATGGACCACCGCCAGATCTGTCCATCTTCTAG 834 45.44 MEFFLEEGKQVHGKSSTLILPALSIGNVGQLAVDLLVSTMSATRIGYLDDPFVLPCIGNNAYEPFPHGELALPLEVYESTSNAVTLVQQRSPVIKGKMVDFAKNLADFIATYGKMHVVLLSSLDFGRWQQIDTSSGSQIHYLSSTNDDGTDDKCEQMGWRRLQEYDPQQRRWKYLSTLTEAKATPEDDLPFDEELEEGDYLPSLPFASLFTFLKAKGVKVTCLFCYCSEGDNIADAFNLAEATGKLLGLSPGGEGIQWQVPFSWKSVYGPPPDLSIF 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6811352 6816114 + CmaCh19G006400.1 Cma19g00640 315328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00640 277 PANTHER PROTEASOME ASSEMBLY CHAPERONE 2 1 277 IPR016562 -
Cma19g00640 277 Pfam PAC2 family 18 247 IPR019151 -
Cma19g00640 277 PIRSF UCP010044 14 277 IPR016562 -
Cma19g00640 277 Gene3D - 203 277 IPR038389 -
Cma19g00640 277 Gene3D - 13 159 IPR038389 -
Cma19g00640 277 PANTHER PROTEASOME ASSEMBLY CHAPERONE 2 1 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00640 K11876 PSMG2, PAC2; proteasome assembly chaperone 2 - csv:101211074 496.893
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g528 . . . . . . . . Cmo19g00653 . . . . . Sed10g2069 . Cpe15g00515 Bhi05g01172 Tan02g0856 Cmetu01g1581 . . . . Cla02g00559 Cam02g0587 Cec02g0588 Cco02g0599 Clacu02g0585 Cmu02g0583 Cre02g0913 Cone12ag1125 Cone8ag1169 . . . Csa07g00817 . . Blo04g00499 . . . Bpe15g00881 . Bma03g00533 . . . . . Cma19g00640 . Car19g00486 . . . . . . . . . . . . . . . . Lsi11g01048 . Chy01g00012 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008933 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00640 Cma_Chr19 FPKM 20.130535 19.411224 11.828372 14.398827 17.090549 18.590544 18.14781 12.623573 13.006864 13.372376