Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00642 ATGGAGGAAATGGGCAATACAAAGCAAGTTCTTGATGGGGATGTTCAGAATTCCTTGAAGCAGGAGATTCTACAGCTTCAAGAACAATTACAAAGCCAGTTCGTCATTCGCCACGCCTTGGAGAAGGCAATGAATTTTCAGCCTCTCTCACTCTGTTCCGCTACCGAAAACTCGATTCCAAAGGCTGAGATGGATCTGATTAAACAAATAGCCGTCTTGGAGTTAGAAGTCGTTTATTTGGAGAAATATCTTCTCTCGTTATACCGACGAACTTTCGAGCAACAAGTATCCTCTTTTTCTACCATGGATGATAGCCAAGAATCATTTGGCAATCAATGTAAAGAACAAAATGAAGTTGAGGAACCGGAGAAGTCGTTACACGTTCATCGCAGCTACTCGTCTCTTTCGCAGAGATCACCCGGTTCATCTCGAAGCTATCCATTATCAAAGTATATGGCTAAAGCAGTAGATTCATACCATTCCCTTCCATTATCAATGCTGGAGCAATCTCGAGTTGATGCTTCGAATTCTACGAGCCTCGGGGAGCACCTCGGTTCCTGGAAATCGGATCAAGCAGACGAGTCGCCTAACTGGATTGCTGAGGAGATGATCAAGTCCATCTCTGCAATATACCGCGAACTTACCGAACCTCCTTCGACGAATCATAAGAATCGTTCTCCTATCTCACCTTTGTCATCCATGTACGAACTTTCTTCACAAGATTTGCGCAGTATGAGGAACTACGAAAAGTCGTTTAACTCGAATTTCGAGAACTCATTTCACACCGGAGAATTTAGTGCACCATACGACACGATGTTGAAGGTGCAATGGATTTCTAGAGAAAGAATGAAGGACATAGATATCAACCGCATGCTACAAGGCTTCAGGTCACTTACTTCTCGGCTCAAAGATGTCGATCTGAAAGTCATGAAACATGACGAAAAACTAGCGTTTTGGATTAATGTACACAACACGCTTGTAATGCATGCTTATTTGCAATATGGTATCCCCAAGAACAGTTTAAAGACTTTGATACTCAAGGCCGCGTATAATGTTGGGGGACACATAATAAGTGTCGATATGATACAAGGCTCGATTCTCGGGTGTCGTTTGCCTCGTCCGGGACAGTGGCTGCACTTGTTTCTCTCGTCGAAAACAAAACTTAAGGTCAACTATGCACAGAAATCCTTTCGAATCAACCACCCCGAACCTCGGTTATACTTTGCTCTATGTTGCGGGAGCCATTCCGATCCAGCAGTTCGTGTCTATACGGCGAAGAGGCTGAACGAGGAGTTGGAGGTTGCAAAAGAAGACTACATCCTTTCGAATTTGAGGACACACAAAGGGCAGAGAATTCTACTCCCCAAGATTGTTGAGTCCTTTGCCAAGGATTCTGGCTTATGCCTGGAAGATTTGGAGGACGTTGTCGAGTGTCTAAGGCTCGACGGGCGGATAAACGACGGTCGGCAGCTGCAACGAAAGAAGTTGTGGAAGAGTATTGGAAGAAACCCTAATCCGCCATTTTTGTTCCTCGAAAACCCTCTCGGAGGGTTTGGTTTGGTGTGGGGAGAGATGGAAGAACAAAGCACGGCTATAATTTTAGCAAGAGCGACAGAGTTGAGGCTGAAGATTAGAAGCTCTGTTAACACCACCACCACGAGTTCGGCGGTAACTTCCTGGGAGAATCGGGATGATCGGTTCGCCGTGGATGAAAATAATGGCGTTGGTTCGCGGCGGAGTGTGGCCGACGCGATTGAGGTAACGGAAGAAGACGAGGAAGCGGTGAGGCTTTTGAATATCTGCGGTGCGCTCGAGTCTCTTGAGAATCAACTCTCTTCGTTTCAGGATTTACAACAACTGCAAAGGTACGAGAAGGAAGTAGCCCTTTCCGAGATCGAGCATAGCCGCGAGATGTTACTGGATAAGCTGAAGAAGTACGAAGGAGAGGATTTGGAAGTGATACACGAGGCGTCAGCTTTTGTTGGGGAGACCGTGCAGCACAACCAGGATCTCATGCTTCCTCCATATACAAGCCATCCTGGTAATGGCTACTTACATCCCTTCCCTTCTGCACTCAAGTTTGTGAGGGCTGCTACAAATAAAGCTACAAAGGAACTTAACGAATCAGAACGGAAACACACGAAATTGAATTCGAGGAACTCGAGGAATAGATTAGGATCCTTCATTAGTATAGCTGCAAAATCCGTGGTTACCATTGTTGGCATAGTATCCCTACTGCACTTGGCTGGTTTTCGACCGAAGTTTGCAGCAAAAATTGCTGCTTTGAAGGCTTTGGACTGTTTTCGACGGTCTGCAGCTGTAAATAAAGAATCACGCCATGGATGCCCTCCGGGAAAGCTCAATGCGTCGTGA 2373 45.85 MEEMGNTKQVLDGDVQNSLKQEILQLQEQLQSQFVIRHALEKAMNFQPLSLCSATENSIPKAEMDLIKQIAVLELEVVYLEKYLLSLYRRTFEQQVSSFSTMDDSQESFGNQCKEQNEVEEPEKSLHVHRSYSSLSQRSPGSSRSYPLSKYMAKAVDSYHSLPLSMLEQSRVDASNSTSLGEHLGSWKSDQADESPNWIAEEMIKSISAIYRELTEPPSTNHKNRSPISPLSSMYELSSQDLRSMRNYEKSFNSNFENSFHTGEFSAPYDTMLKVQWISRERMKDIDINRMLQGFRSLTSRLKDVDLKVMKHDEKLAFWINVHNTLVMHAYLQYGIPKNSLKTLILKAAYNVGGHIISVDMIQGSILGCRLPRPGQWLHLFLSSKTKLKVNYAQKSFRINHPEPRLYFALCCGSHSDPAVRVYTAKRLNEELEVAKEDYILSNLRTHKGQRILLPKIVESFAKDSGLCLEDLEDVVECLRLDGRINDGRQLQRKKLWKSIGRNPNPPFLFLENPLGGFGLVWGEMEEQSTAIILARATELRLKIRSSVNTTTTSSAVTSWENRDDRFAVDENNGVGSRRSVADAIEVTEEDEEAVRLLNICGALESLENQLSSFQDLQQLQRYEKEVALSEIEHSREMLLDKLKKYEGEDLEVIHEASAFVGETVQHNQDLMLPPYTSHPGNGYLHPFPSALKFVRAATNKATKELNESERKHTKLNSRNSRNRLGSFISIAAKSVVTIVGIVSLLHLAGFRPKFAAKIAALKALDCFRRSAAVNKESRHGCPPGKLNAS 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6828123 6835704 + CmaCh19G006420.1 Cma19g00642 315330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00642 790 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 102 501 - -
Cma19g00642 790 Coils Coil 692 719 - -
Cma19g00642 790 PANTHER UNCHARACTERIZED 102 501 - -
Cma19g00642 790 Pfam Protein of unknown function, DUF547 309 440 IPR006869 -
Cma19g00642 790 PANTHER TERNARY COMPLEX FACTOR MIP1 LEUCINE-ZIPPER PROTEIN 6 99 - -
Cma19g00642 790 Pfam Leucine-zipper of ternary complex factor MIP1 15 94 IPR025757 -
Cma19g00642 790 PANTHER UNCHARACTERIZED 6 99 - -
Cma19g00642 790 MobiDBLite consensus disorder prediction 103 146 - -
Cma19g00642 790 MobiDBLite consensus disorder prediction 114 128 - -
Cma19g00642 790 Coils Coil 629 649 - -
Cma19g00642 790 MobiDBLite consensus disorder prediction 129 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00642 - - - csv:101203131 743.036
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00642 Cma20g00866 CCT
Cma11g01782 Cma19g00642 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00560 Cma-Chr2:3166721 Cma19g00642 Cma-Chr19:6828123 6.91E-128 dispersed
Cma03g01024 Cma-Chr3:7139303 Cma19g00642 Cma-Chr19:6828123 9.38E-121 dispersed
Cma15g01117 Cma-Chr15:7123151 Cma19g00642 Cma-Chr19:6828123 1.04E-49 dispersed
Cma16g00077 Cma-Chr16:332085 Cma19g00642 Cma-Chr19:6828123 4.74E-09 dispersed
Cma18g01295 Cma-Chr18:9984123 Cma19g00642 Cma-Chr19:6828123 1.75E-08 dispersed
Cma19g00642 Cma-Chr19:6828123 Cma20g00866 Cma-Chr20:4155344 1.62E-56 dispersed
Cma11g01782 Cma-Chr11:11921966 Cma19g00642 Cma-Chr19:6828123 7.44E-101 wgd
Cma19g00642 Cma-Chr19:6828123 Cma02g00419 Cma-Chr2:2125252 1.03E-56 wgd
Cma19g00642 Cma-Chr19:6828123 Cma07g00741 Cma-Chr7:3273880 1.41E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00642 Cma_Chr19 FPKM 2.648996 2.736167 2.097045 2.211024 7.168294 7.963605 8.560066 4.901968 4.588956 4.173953