Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00645 ATGGAGGGTACCTGCAGTTCTCTGCGGTCACCGGCTTTAACCATAGCGTCCTCCTCTTTGTCTAGAAGTGGGTTCTCAGAGAAGCCATTGTTGCCTGCTCGAGCTGTGAAATTATCGAAGAACAAGAGATGCCCACTTGCTCGAAGCCTCAAATTTCATCCCATTACAGCTCAAGCTTCGAGCACAAGTAATTTTAGCTCAGAAGCAGCTCCGGCAATCTCAAAGAAGGAAGTTTCAAAAGATGAGGATCTTAGTGTTAAAAAGATTAAGCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGGAATGTGACTTGGAGAGACCAAATCAGATTGGACCCGCAATAGGGAATGCATCGATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATCTCTGGACCTTATCGAATCGACTATATGGCTACCAAAAACTTGGTTGAAGCAGCAACTGTTGCAAAAGTGAAGCATTTCGTTCTGCTTACGTCGCTGGGAACCAACAAGATTGGATTTCCTGCTGCCATTCTCAATTTGTTTTGGGGAGTCCTGTTATGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTGAGGCCTGGGGGCATGGAGAGGCCTACAGATACTTTCAAGGAAACTCATAACACTACTGTTTCGCCTGAAGATACTTTGTTTGGTGGTCTGGTGTCGAATCTTCAGGTTGCAGAGCTCATTGCATGCATAGCAAAAAATCCTGGTCTCTCATGCTATAAAGTGATAGAAGTAATTGCCGAGACAACTGCACCATTGACTCCCGGAGAGGATCTTCTTACAAAAATACCATCTAAAAAGGAATATGGCGCTGCACGCATTGTCGATCCACCACCTCCTGAGAGCGTTTCATCAGAACCGTCGAGCATTGCCAAAGAAAAGGAATCAGCTGAAGCAAAGCCACCCACTCAAAGGGTTTCATCAGAACAGTTGAACATTGCAAAAGAGAAGGAATCAGCTGTAGCAAATGTTACAAAACAGTCATTATCACCCTACATTTCGTACGAGGATTTAAAACCTCCAACATCACCTACTCCAGCTGCACCTGTTGGGAAAATAGATTTAAATGTCGTCGACGGAGTCTCATCGAGCGCTCAAACGAGTTCATCAGAATCGTCAACTGAAATTGCCGAGGCGAATCCTGCACCTGCTCCTGAAAAAGCAGTGACAGTGAAACCTCTCTCCCCTTATGTAGCATATGAAGATCTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCATCAACATCTCCCTCAAACGGTCCACCTCAGCCTGCTACCACGAGCGTAAACAGCTCAACACCGATTCCAGAGGCAGACAATTCGAGTGAAGCACATCTTCCCAAGCCAAAGAAGCTACAACCACTGTCACCTTTCACCATGGACGAGCGTTTTTCTAAGGAAGAACATTATGAGTGGTTTAAGGATTATTCCCATTTTCGAAATCTCATACTTCCACTTCTCAAACCCGATTCATCAGTATTGGAATTGGGTAGTGGAAATTCGAAGCTTTCTGAGGAGTTATATAACGATGGAATTACTGATATAACATGCATTGATTTGTCTGCTGTTGCTGTTGAGAAGATGCAAAAACGTTTACATTTGAAGGGTATGAAAGAAATAAAGGTGCTGGAAGCTGACATGCTAGACATGCCTTTCGGTGACGAGTGTTTTGACATAGTTGTCGAGAAAGGAACCATGGATGTTTTGTTCGTGGATGGTGGTGACCCGTGGAATCCTCAACCATCAACGCGATCGAAGGTCATGGCAATGCTTGAAGGTGTTCATAGGGTCTTGAAGAAAGATGGCATTTTTGTCTCAATTACATTTGGCCAGCCGCATTTCAGGCGTCCCTTATTCAATGCTCCCGAGTTTACTTGGTCGTTTGAGTGCAGTACTTTTGGCGATGGATTTCATTACTTCTTCTACACCTTGCGTAAGGTTAGCACGGATGTTTCGCCTTTAATTTCTTGTGTTGGGTCGGTTGTTATTTTCGGGATAGGCTGTAGATGA 2082 44.04 MEGTCSSLRSPALTIASSSLSRSGFSEKPLLPARAVKLSKNKRCPLARSLKFHPITAQASSTSNFSSEAAPAISKKEVSKDEDLSVKKIKLDEAVEKLETVECDLERPNQIGPAIGNASIVICCIGASEKEIFDISGPYRIDYMATKNLVEAATVAKVKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDTFKETHNTTVSPEDTLFGGLVSNLQVAELIACIAKNPGLSCYKVIEVIAETTAPLTPGEDLLTKIPSKKEYGAARIVDPPPPESVSSEPSSIAKEKESAEAKPPTQRVSSEQLNIAKEKESAVANVTKQSLSPYISYEDLKPPTSPTPAAPVGKIDLNVVDGVSSSAQTSSSESSTEIAEANPAPAPEKAVTVKPLSPYVAYEDLKPPTSPSPSAPSLSFSSTSPSNGPPQPATTSVNSSTPIPEADNSSEAHLPKPKKLQPLSPFTMDERFSKEEHYEWFKDYSHFRNLILPLLKPDSSVLELGSGNSKLSEELYNDGITDITCIDLSAVAVEKMQKRLHLKGMKEIKVLEADMLDMPFGDECFDIVVEKGTMDVLFVDGGDPWNPQPSTRSKVMAMLEGVHRVLKKDGIFVSITFGQPHFRRPLFNAPEFTWSFECSTFGDGFHYFFYTLRKVSTDVSPLISCVGSVVIFGIGCR 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6839543 6850584 - CmaCh19G006450.1 Cma19g00645 315333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00645 693 MobiDBLite consensus disorder prediction 418 481 - -
Cma19g00645 693 Pfam NAD(P)H-binding 93 253 IPR016040 -
Cma19g00645 693 Gene3D - 71 282 - -
Cma19g00645 693 MobiDBLite consensus disorder prediction 431 463 - -
Cma19g00645 693 MobiDBLite consensus disorder prediction 379 406 - -
Cma19g00645 693 Pfam Methyltransferase domain 513 633 IPR025714 -
Cma19g00645 693 Gene3D Vaccinia Virus protein VP39 483 677 IPR029063 -
Cma19g00645 693 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 492 669 IPR029063 -
Cma19g00645 693 MobiDBLite consensus disorder prediction 288 327 - -
Cma19g00645 693 CDD SDR_a5 96 267 - -
Cma19g00645 693 CDD AdoMet_MTases 517 633 - -
Cma19g00645 693 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 94 264 IPR036291 -
Cma19g00645 693 MobiDBLite consensus disorder prediction 379 395 - -
Cma19g00645 693 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 85 478 IPR044719 -
Cma19g00645 693 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 6 84 IPR044719 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00645 - - - cmo:103495191 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01389 Cma-Chr3:8777938 Cma19g00645 Cma-Chr19:6839543 6.94E-20 dispersed
Cma07g00116 Cma-Chr7:624416 Cma19g00645 Cma-Chr19:6839543 7.58E-22 dispersed
Cma11g00866 Cma-Chr11:4401165 Cma19g00645 Cma-Chr19:6839543 5.73E-13 dispersed
Cma14g01563 Cma-Chr14:11739365 Cma19g00645 Cma-Chr19:6839543 1.40E-22 dispersed
Cma19g00645 Cma-Chr19:6839543 Cma17g00979 Cma-Chr17:7230916 5.42E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g545 . . . . . Bpe12g00072 . . Cmo19g00656 . . . . . Sed10g2078 . Cpe15g00519 Bhi05g01180 Tan02g0850 Cmetu01g2149 . Hepe02g0546 . . Cla02g00555 Cam02g0580 Cec02g0582 Cco02g0592 Clacu02g0580 Cmu02g0576 Cre02g0906 Cone12ag1129 . . . . Csa07g00828 . Cme01g00005 . Blo13g00558 Bda15g00020 . . . . . . . . . Cma19g00645 . . . . . . . . . . . . . . . . . . Lsi11g01056 . Chy01g00006 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00645 Cma_Chr19 FPKM 3.784579 3.496165 11.649508 11.653115 47.342728 46.846119 46.547626 5.066533 5.044069 5.31661