Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00651 ATGAAGCATCTGAAACATGGGTTACTATGCCATGTCCAAGCCATCAAATCCGGGTTTACGCCCACCATTTTCACGTCGAATCAACTCATAAGCTTGTATGCGAAACATGGTCTTCTTGGCGATGCCCACAAAGTGTTCGACGAAATGCCTGAACGGAATGTCTTCTCATGGAATGCGATAATTGCAGCGTATATCAAGTCTCAGAACTTGAGAAAAGCGCGGGAATTATTTGACTCCGCTCATTATAGAGATTTGGTTACTTACAACTCAATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGGCTCAAGCACTTGGGCTTTTTGTGGAAATGCAAACAGCCTCTGATATGATTAGACTTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTTTCTTATGGAAAACAGTTACATACCTTTATGTTGAAGACTGCTAATGATTTAAGCGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGATATCAGGTTTTGTTCAGAACGGTTACGACGAAGAGTCATTAAAGTTATTCGTTAATATGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATACATGCTTATGTTTTGAAGAATGGGCTGATTGTTAATCCCTTCATTGGCAGTGGCCTTGTTGATGTATACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTCAGAATTGACGACGCGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTATTGAATATGTCAAATCACAGCAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCTTGATGTGCTGATTCTTGTCAGCATAATTGGTGCTTGTGCTAGACAAGCTGCTCTGGCTCCTGGGAAGCAGATACACGGTTACATGCTCCGAGCAGGCATCGAATTCAAAGTGAAACTAGCCAGTTCATTGGTTGATATGTACTCAAAATGTGGAAGTATCATTTATGCAGAAAGAATTTTCAGAGAAGTTCTTGACAAGGATTCTATTCTTTACAACATTATGATAGCTGGCTATGCTCACCATGGGTGGGAAAATGAAGCAGTTCATCTTTTCAAGGAAATGATTGAAAACGATTTCGAACCAGATGCAATCACTTTCATTGCACTACTTTCTGCGTGTCGACACAGCGGTTTAGTCGAACTAGGTGAGCGTTTTTTCGACTCTATGACTAATGATTACAATATCAGTCCCGAAATCGATCATTATGCTTGTATGATCGATTTGTACGGAAGGGCTAATGAACTAAATAAGGCATTGGCATTCATGAAAAGGATTCCCATAGAGTTGGATGCTGTCATATGGGGAGCATTTCTAAATGCTTGTAGGATCAATGGGAATACTGAACTTGCTAGAGAAGCAGAAGACGAACTGTTGATGATCGAAGGAGAAAACGGCGCTCGATACGTGCAGTTAGCGAATGTTTATGCTGCAGAAGGGAATTGGGAGGAGATGGGACGAATAAGGAAGAAGATGAAAGGAAAGGATGTTAAGAAGAATGCTGGTTTTAGTTGGGTTTTTGTGGAAAATAAGTTTCATGTGTTCATTTCTGGTGATAGGTTTCACTTACAAAATGAGGCTATATATTCAACCTTAGCCTCCTTGACTGATGAGTTGCTTGCACGGGAAGCCATGAATGTTCGCAGAGACGGGGCGTTGATGAGAAACTCCTCGCAAGGATCCATTTTCTGCAAATCGAAGGTCGGGACTGCCATATCTATCGGCGTCCTTCTTGGATTCGTTTTTGCGTTCTTGTTCCCTGCTGGGATCTTCAAATCGAGCGCTCTCTCAGTTCGTGATTCTCGCTCCGTCAAATTCATAACCCAGGCCGATTCGAATTCGTGCGATTCATCTGAACGGATCGACATGTTAAAATCCGAGTTTATATCAGCATCTGAGAAGAATGCTCAGCTGGAAAAACAGATCAGGGAATTAACGGAGAAGCTTAAGTTGGCTGAGCAAGGTAAAGATCATGCACAGAAGCAAGTTCTTGCTTTAGGTAAACAGTCGAAAGCCGGGCCATTCGGAACGGTTAAAGCTGTAAGAACAAATCCACCAGTTATCCCTGATCAATCTGTCAATCTAAGATTAGCAAATATATTAGAGAAAGTTGCCGTTAATCGAGAGCTTATAGTCGCGGTAGCAAATTCAAATGTGAAGGTGATGTTGGAACTATGGTTTACTACCATCAAGAAAGCAGGAATACCTAATTATCTTGTGGTTGCTTTGGATGATGAAATTGTTCAATTCTGTAAAAAAAATGATGTTCCAGTTTATAAGAGAGACCCTGATGAAAAAGTTGATTCAATTGGAAGAACAGGAGGGAACCATGCCGTTTCCGGGACGAAATTCAGCATTTTGAGGGAGTTTCTGCAGTTAGGATATGGTGTTTTACTATCTGATGTCGATATTGTTTACTTGCAAAATCCTTTCGATCATCTTTATCGGGATTCAGATGTTGAATCCATGACCGATGGTCATGACAATGCAACTGCTTATGGATACAACCATGTCTTTGAGGAACCTTCAATGGGTTGGGCTCGATTCGCGCACACAATGCGTATCTGGGTTTATAACTCGGGCTTCTTCTATATTCGACCAACTATTCCTGCAATTGAGCTTTTAGATCGTGTGGCTAAACGTCTTTCTCAAGAACGTAATTCATGGGACCAGGCTGTTTTCAATGAGGAACTGTTTTTCCCTTCGCATTCGAACTACGAGGGGCTTTATGCTTCAAGAAGAACTATGGATTTCTATCTTTTTATGAATAGCAAGGTTCTATTCAAGACTGTAAGGAAGGATGATAATCTGAAAAAGTTGAAGCCAGTCATTGTTCATGTGAATTACCATCCCGATAAGTTTCCTCGAATGAAAGCCGTGGTCGACTTCTACGTCAACGGGAAGCAGGATGCTCTGAACCCGTTCCCTGACGGCTCGGATTGGGTCACTCGTTTAGCATATTGA 3342 41.11 MKHLKHGLLCHVQAIKSGFTPTIFTSNQLISLYAKHGLLGDAHKVFDEMPERNVFSWNAIIAAYIKSQNLRKARELFDSAHYRDLVTYNSMLSGYVSSDGYEAQALGLFVEMQTASDMIRLDEFSLTIMLNLTAKLCVLSYGKQLHTFMLKTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAVDLFSRERDRNDVVAWNTMISGFVQNGYDEESLKLFVNMADENVRWNEHTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMIVGYSSQGNMVEARKLFDSLDEKNSVVWTALFIEYVKSQQFEAVFELLSEYRKEAAVLDVLILVSIIGACARQAALAPGKQIHGYMLRAGIEFKVKLASSLVDMYSKCGSIIYAERIFREVLDKDSILYNIMIAGYAHHGWENEAVHLFKEMIENDFEPDAITFIALLSACRHSGLVELGERFFDSMTNDYNISPEIDHYACMIDLYGRANELNKALAFMKRIPIELDAVIWGAFLNACRINGNTELAREAEDELLMIEGENGARYVQLANVYAAEGNWEEMGRIRKKMKGKDVKKNAGFSWVFVENKFHVFISGDRFHLQNEAIYSTLASLTDELLAREAMNVRRDGALMRNSSQGSIFCKSKVGTAISIGVLLGFVFAFLFPAGIFKSSALSVRDSRSVKFITQADSNSCDSSERIDMLKSEFISASEKNAQLEKQIRELTEKLKLAEQGKDHAQKQVLALGKQSKAGPFGTVKAVRTNPPVIPDQSVNLRLANILEKVAVNRELIVAVANSNVKVMLELWFTTIKKAGIPNYLVVALDDEIVQFCKKNDVPVYKRDPDEKVDSIGRTGGNHAVSGTKFSILREFLQLGYGVLLSDVDIVYLQNPFDHLYRDSDVESMTDGHDNATAYGYNHVFEEPSMGWARFAHTMRIWVYNSGFFYIRPTIPAIELLDRVAKRLSQERNSWDQAVFNEELFFPSHSNYEGLYASRRTMDFYLFMNSKVLFKTVRKDDNLKKLKPVIVHVNYHPDKFPRMKAVVDFYVNGKQDALNPFPDGSDWVTRLAY 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6871014 6876851 - CmaCh19G006510.1 Cma19g00651 315339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00651 1113 Coils Coil 747 788 - -
Cma19g00651 1113 Gene3D Tetratricopeptide repeat domain 117 220 IPR011990 GO:0005515
Cma19g00651 1113 Gene3D Tetratricopeptide repeat domain 390 508 IPR011990 GO:0005515
Cma19g00651 1113 Pfam PPR repeat family 453 500 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat family 221 268 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 86 113 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 162 182 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 298 322 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 25 54 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 327 353 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 191 214 IPR002885 -
Cma19g00651 1113 Pfam PPR repeat 55 78 IPR002885 -
Cma19g00651 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cma19g00651 1113 TIGRFAM PPR: pentatricopeptide repeat domain 324 355 IPR002885 -
Cma19g00651 1113 TIGRFAM PPR: pentatricopeptide repeat domain 27 54 IPR002885 -
Cma19g00651 1113 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Cma19g00651 1113 TIGRFAM PPR: pentatricopeptide repeat domain 457 490 IPR002885 -
Cma19g00651 1113 TIGRFAM PPR: pentatricopeptide repeat domain 55 79 IPR002885 -
Cma19g00651 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Cma19g00651 1113 PANTHER GLYCOSYLTRANSFERASE 684 1107 - -
Cma19g00651 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 115 IPR002885 -
Cma19g00651 1113 PANTHER ARABINOSYLTRANSFERASE RRA3 684 1107 IPR044290 GO:0016757|GO:0080147
Cma19g00651 1113 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Cma19g00651 1113 Gene3D Tetratricopeptide repeat domain 228 388 IPR011990 GO:0005515
Cma19g00651 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cma19g00651 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Cma19g00651 1113 Pfam E motif 573 632 IPR046848 -
Cma19g00651 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 219 IPR002885 -
Cma19g00651 1113 SUPERFAMILY Nucleotide-diphospho-sugar transferases 837 1046 IPR029044 -
Cma19g00651 1113 Pfam Nucleotide-diphospho-sugar transferase 861 1079 IPR005069 -
Cma19g00651 1113 Gene3D Tetratricopeptide repeat domain 509 658 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00651 - - - cpep:111776408 1311.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00172 Cma-Chr9:730445 Cma19g00651 Cma-Chr19:6871014 5.54E-160 dispersed
Cma19g00651 Cma-Chr19:6871014 Cma03g00786 Cma-Chr3:6079258 2.26E-07 dispersed
Cma19g00651 Cma-Chr19:6871014 Cma01g01892 Cma-Chr1:12388132 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00651 Cma_Chr19 FPKM 11.709416 13.568136 7.123109 7.363979 6.002821 4.716652 6.314266 8.151089 7.784717 8.640977