Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00658 ATGGAGGAGAAGCGCCGCGACGCCCGAAATTTACCGGCAAACAGCACCGATTCTCCGTCATCGGAGCCGCCTTCTTCTCGTCGTCGAGCTGGAGCTCAGAAGCGAAAGGCAAGCACTCTCGGTGGCTCTATCTCCTCATCCGCGCCCTCGAAACGCGTTACTCGCGAAAAATCTGCGCTTACACATCCTCCAAATCATAACGGCCCTTTCACCAGAGCTCGATTTGGCCCTAACAATGTTGCTGGAGCAGCATCGGCTAATGGGGGACTTGCCTCCGCCGCCGAATCAGTTAAGACGGAAGGCTCTTTACTTCATTCCGAAGTTCAGCGTGGAGACGCGTTGGTCGCCGCGGCGGAGGAATTGAACAAGGCGACTAGATTGGCGAATATGGAGGCGTCTTTCGAAGCTGATTTCGAAGCCATTAAATCTCGGAGTGCGAATGCTCATGTCGTTCCGAATCATTGCGGTTGGTTTTCATGGACAGAAGTCCATCCAATTGAGGAACGTTCGATGCCTTCTTTTTTCAGTGGAAAGGATGGCACTCGAAGTCCTGATATATATATCAAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCCAGTACGCAGCTTGAAGCAAAAGATCTATCAGAGCTGGAAGTTGGAGAACAAGATGCTAGAAAGGAGGTGATGGAGTTTCTTGACCATTGGGGTTTGATTAATTTTCACCCTTTACTATCCGCAGAATCAATTTCAACAAGTGATCTTGACGATGAAAGTCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTGCCCATCTATTGTTCCGAAGATCAATGTTACCACTGCAGCTCCACCTAGATTGCTTAGAGAATCTGCAATTTCTGAAGAGTTGACGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCATGCTCTGCTGATTGCTCTCGGAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCCGATATGTCTTCATCAGATTTTATTCTCATGGAGTCCGTTGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCTGAACATGTGGCCACCAAAACAAAAGCCCAGTGTATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAATCTGAGGATAATGTTGAAGACGGTGCAAAAGAAACTGTTCCACCTTTAACTGAAAATGATTCATCAGTTCCTACTGATATCACTGAATCATTGGATAATAAGGCTACTGAAAAAGAGGCTTCGAATACAGAAACTGCAACCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCTGGATAATTCAAAATCAGAGGATGTTGAAGGAAAAGCTGCTTTAGATAACTCCAAATTAGAAGATGGTGATCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTATTAACACCTGAGCATCCACTTTCATTTGCTGATGTAGGGAACCCTGTCATGGCATTGGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAGTGCATCAGCCCGTTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGAACTGGCTACAAGGCACTGCTTTATTTTAGAAGATCCACCAGATGTTGAGAAGGCCAAAGCTAATTCACAGAGTATTGTCAATGTGGAAACTCAGAAAAATGACAAGGAACAGTGTGCGAAACAGAGACCAGACAATTCTACTTCAGTCTTAGATGACGGAGCCCTATCAACTAATGACAGTAATAACAAAAATGGAGAATTGGTGACAAAGGAGACTATGGATAATGAAAATTCTTCAGATGCTATTATAGAACACAATCCAATTACTAATCATGATTCAGATAGAACAAGTAATTTGAAAGAATCGAGAGAACCAGAATTACCTGAGGTTGAAAGAACAGGCATTGTGAAGGAATGTGAAAATGTAGAATCAAAATCGACATCAAATCCAGTTGAAAAGTTGGGAGAAGGAACTTCTGCTGAAAAATCATCACAACCCAAGTTGTCACCAAAGGATGTTCATATGTCAGATTTGCAACATGCTGAAAAAACTGAGATTCAGAAGCAAGTTCCATCTCATTCTGCCAAAACTAAAAAAGAATTAGATGACGAGCCAAATCATTTACCCTCTGCAAACGAGCCTCAACCAACAATTTCTGCTAATTCAGTGAAAGAAGCCTCAAAAGATGTAGCCATTATACCTGATTCTCACAATGAGAATGAACCTGCACAAACTGAAACGTCTAAATCCGTGGTTGACCAGGGAGCAAGCAAGGTCGCTGATTCTTTGCCCTCAGCAGAGAATGCAACTCCACTACCAGTAAAACCAACTTCGGTTATTGAAAGAGGAGCAGATGATAATCAAAGCAAGGACAACAAAGAAGAAAACTCCAATTGTATGAGTAAAAAAGAGGATAAAATCGACAAGTTGAAGCGTGCTGCGGTTACGACACTGTCAGCAGCAGCAGTGAAGGCAAAAATCCTGGCTAATCAGGAAGAGGACCAAATCCGTCATCTTGCCATGATATTAATCGAAAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGACATGGATAACGTGACGGTGAGAATGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATCGCTGCTCGACTAGGCTTACCTGCTTCGTCATCACGAGGTGGGGCACCAACATTACCAACAAACAGGATGCCCATGAACTTTGCAAACACAGTCCCAAGGCCTCCAATGGGCATGGTGCCCAAAAGGCCTCCGACATCGGGACTGCCGGGTATGGCTGCTTCTAACCCTAACCCCCAATACCCAACAACCAGTACAACAATTTCTGGGAGTTCATTTCGCCCTGCAAATCAGGACACACTTTCTTCTGTTGGGTCAAAGTAA 3078 43.73 MEEKRRDARNLPANSTDSPSSEPPSSRRRAGAQKRKASTLGGSISSSAPSKRVTREKSALTHPPNHNGPFTRARFGPNNVAGAASANGGLASAAESVKTEGSLLHSEVQRGDALVAAAEELNKATRLANMEASFEADFEAIKSRSANAHVVPNHCGWFSWTEVHPIEERSMPSFFSGKDGTRSPDIYIKIRNWIMKKFHANPSTQLEAKDLSELEVGEQDARKEVMEFLDHWGLINFHPLLSAESISTSDLDDESQKDSLVEKLFHFETLESCPSIVPKINVTTAAPPRLLRESAISEELTRPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESVGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEDNVEDGAKETVPPLTENDSSVPTDITESLDNKATEKEASNTETATKEDTGEVKVGLDNSKSEDVEGKAALDNSKLEDGDQKVSEDIALNALREAFEAIGYVLTPEHPLSFADVGNPVMALAAFLARLVGSDVASASARFSLKSISQKSPSLELATRHCFILEDPPDVEKAKANSQSIVNVETQKNDKEQCAKQRPDNSTSVLDDGALSTNDSNNKNGELVTKETMDNENSSDAIIEHNPITNHDSDRTSNLKESREPELPEVERTGIVKECENVESKSTSNPVEKLGEGTSAEKSSQPKLSPKDVHMSDLQHAEKTEIQKQVPSHSAKTKKELDDEPNHLPSANEPQPTISANSVKEASKDVAIIPDSHNENEPAQTETSKSVVDQGASKVADSLPSAENATPLPVKPTSVIERGADDNQSKDNKEENSNCMSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRHLAMILIEKQLHKLESKLAFFNDMDNVTVRMREQLDRSKQRLFQERAQIIAARLGLPASSSRGGAPTLPTNRMPMNFANTVPRPPMGMVPKRPPTSGLPGMAASNPNPQYPTTSTTISGSSFRPANQDTLSSVGSK 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6934953 6945622 + CmaCh19G006580.1 Cma19g00658 315346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00658 1025 SMART zz_5 306 350 IPR000433 GO:0008270
Cma19g00658 1025 Pfam SWIRM-associated region 1 868 945 IPR032451 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 614 639 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 38 65 - -
Cma19g00658 1025 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Cma19g00658 1025 SUPERFAMILY Homeodomain-like 364 424 IPR009057 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 12 27 - -
Cma19g00658 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 415 IPR017930 -
Cma19g00658 1025 ProSitePatterns Zinc finger ZZ-type signature. 312 338 IPR000433 GO:0008270
Cma19g00658 1025 Gene3D - 302 353 IPR043145 -
Cma19g00658 1025 PANTHER SWI/SNF COMPLEX-RELATED 44 982 - -
Cma19g00658 1025 ProSiteProfiles Zinc finger ZZ-type profile. 307 361 IPR000433 GO:0008270
Cma19g00658 1025 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Cma19g00658 1025 MobiDBLite consensus disorder prediction 449 496 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 989 1025 - -
Cma19g00658 1025 SUPERFAMILY Homeodomain-like 156 238 IPR009057 -
Cma19g00658 1025 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 44 982 - -
Cma19g00658 1025 CDD SANT 385 410 IPR001005 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 790 807 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 1 79 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 836 857 - -
Cma19g00658 1025 ProSiteProfiles SANT domain profile. 364 415 IPR017884 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 599 639 - -
Cma19g00658 1025 CDD ZZ_RSC8 310 354 IPR041984 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 421 496 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 725 759 - -
Cma19g00658 1025 Pfam Myb-like DNA-binding domain 367 409 IPR001005 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 692 722 - -
Cma19g00658 1025 Gene3D - 364 415 - -
Cma19g00658 1025 ProSiteProfiles Myb-like domain profile. 361 411 IPR001005 -
Cma19g00658 1025 Gene3D - 155 239 IPR036388 -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 659 691 - -
Cma19g00658 1025 Pfam Zinc finger, ZZ type 309 344 IPR000433 GO:0008270
Cma19g00658 1025 MobiDBLite consensus disorder prediction 654 857 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 969 1025 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 433 448 - -
Cma19g00658 1025 MobiDBLite consensus disorder prediction 762 776 - -
Cma19g00658 1025 SMART sant 365 413 IPR001005 -
Cma19g00658 1025 SUPERFAMILY RING/U-box 308 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00658 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101218015 1614.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01377 Cma-Chr1:9767066 Cma19g00658 Cma-Chr19:6934953 1.70E-11 dispersed
Cma09g00777 Cma-Chr9:3750999 Cma19g00658 Cma-Chr19:6934953 9.45E-12 dispersed
Cma13g00361 Cma-Chr13:4144457 Cma19g00658 Cma-Chr19:6934953 5.62E-11 dispersed
Cma18g00616 Cma-Chr18:5437086 Cma19g00658 Cma-Chr19:6934953 2.06E-11 dispersed
Cma11g01104 Cma-Chr11:6117295 Cma19g00658 Cma-Chr19:6934953 2.44E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00658 Cma_Chr19 FPKM 11.025551 12.598467 14.662205 14.791187 16.330151 17.048033 17.452456 14.232872 11.964418 11.868881