Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00663 ATGGCGGTTTCCGGTAGCAATTCGACCCAGATTCATCCCTCCGACGAATCTTCCTCCAGTTCTTCCGAGAGTTCACTATCCAACTTGAAAGTCTACGCCGCGATCGGCATAATTACTGCATGTGTGATTGCAGCGTCTGCTCTGATCTTCCTCTGTATCCGTAAAAATAGGGACTCGAGGAAGCACAAAATGCGGGTGAAGCATAGTTCCGGATTAATTCCATTGTTCTCCAAGGAGATCGCCGAGATCAATGAGTCCGATCGGAGTGTGGATTGCGAGAAAGGGGAAGTCATTAGGGTTGAGAATAAGAAGGAAACTGAGTTCGAGACTGGAGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCCGGCGGCGGTCGAAGCGATGTGCCGGTGGAGGATCAGAACTTAGGGTGGGGACGGTGGTACACCTTGAAGGAACTCGAAATTGCCACCAATGGGTTTCTGGAAGAGAATGTTATTGGAGAAGGAGGCTACGGCATCGTGTACAGAGGCGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAACAAGGGTCAGGCAGAGAAAGAGTTCCAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATGGGTTATTGTGCAGAAGGAACACAGAGGATGCTTGTGTATGAATTTGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTGGGGCCTGTTAGCCCTCTAACATGGGATATTAGGATGAAAATTGCCCTTGGAACAGCAAAGGGTTTGGCGTATTTGCATGAGGGTTTAGAACCGAAAGTTGTGCACCGTGATATAAAATCTAGCAACATTCTCTTAGATAGAAAATGGAATGCGAAAGTGTCTGATTTTGGACTTGCGAAGCTCTTACAACCTGAAGCGAGCTACGTAACTACTCGTGTTATGGGGACCTTTGGATATGTTTCACCTGAGTATGCAAGTACAGGCATGCTTAACGAGGGGAGCGATGTATATAGTTTCGGAGTTCTACTTATGGAGATAATTACTGGCCGAAGTCCAATTGACTATTCCAGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAATTCGGCGTGGCGAAGAGGTTGTCGATCCGTTGATTGAGATTCCACCCCCTCCAAGAACTCTAAAGCGAATGTTGCTTGTTTGTCTACGCTGCATCGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGATAGAGGCAGACGACTTTCCTTATCGTTCGGAGCTTCGATCCGTGCGAGAGAAAGATAACCAGCCTTCTAGCTTAGACGTGCCGAGTAAACTTCCAATGAAGCATGCTGGTATATAG 1389 47.52 MAVSGSNSTQIHPSDESSSSSSESSLSNLKVYAAIGIITACVIAASALIFLCIRKNRDSRKHKMRVKHSSGLIPLFSKEIAEINESDRSVDCEKGEVIRVENKKETEFETGVGKKSQESDVSGGGRSDVPVEDQNLGWGRWYTLKELEIATNGFLEENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFQVEVEAIGKVRHKNLVGLMGYCAEGTQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVAIRRGEEVVDPLIEIPPPPRTLKRMLLVCLRCIDLDANKRPKMGQIVHMIEADDFPYRSELRSVREKDNQPSSLDVPSKLPMKHAGI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6968966 6972916 - CmaCh19G006630.1 Cma19g00663 315351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00663 462 Gene3D Transferase(Phosphotransferase) domain 1 230 442 - -
Cma19g00663 462 CDD STKc_IRAK 160 426 - -
Cma19g00663 462 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524
Cma19g00663 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cma19g00663 462 Pfam Protein kinase domain 156 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00663 462 Gene3D Phosphorylase Kinase; domain 1 131 229 - -
Cma19g00663 462 SMART serkin_6 154 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00663 462 PANTHER OS01G0323000 PROTEIN 16 442 - -
Cma19g00663 462 MobiDBLite consensus disorder prediction 1 23 - -
Cma19g00663 462 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00663 462 PANTHER OS03G0227900 PROTEIN 16 442 - -
Cma19g00663 462 SUPERFAMILY Protein kinase-like (PK-like) 138 430 IPR011009 -
Cma19g00663 462 MobiDBLite consensus disorder prediction 438 462 - -
Cma19g00663 462 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00663 Cma-Chr19:6968966 Cma11g01962 Cma-Chr11:12853356 5.38E-155 dispersed
Cma11g01100 Cma-Chr11:6090163 Cma19g00663 Cma-Chr19:6968966 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69336 PF00069 Pkinase 7.80E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00663 - - csv:101219201 849.351