Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00666 ATGGCTGCGATCTTAGCTCGGAAATCCCTTCTCGCTCTTCGTGCTCGTCAGCCTGCCATCTCTGGACAAGCATTGCAAGGTTCTCGTTTTCATGATCTACGGTCAAGTGCACACTTGTACAGTACCAAAAGAGAAGATGAAGAAAGAGAGCAGCTTGCCAAGGAGATGTCAAAGGATTGGAGTTCAATTTTTGAGCGTAGCATAAACACATTATTTCTCACTGAAATGGTCCGGGGTTTGATGCTGACTCTTAAATACTTCTTTGAGAAAAAAGTCACTATCAATTATCCATTCGAGAAAGGCCCCCTAAGCCCTCGTTTTCGAGGTGAGCATGCCCTCCGAAGATATGCAACTGGAGAAGAACGATGCATTGCATGTAAACTTTGTGAAGCTATTTGCCCTGCCCAAGCAATCACAATCGAAGCTGAGGAACGGGAAGATGGTAGCCGTAGGACCACAAGGTATGACATTGACATGACCAAATGCATCTACTGTGGGTTCTGTCAAGAGGCATGCCCTGTTGACGCCATTGTTGAAGGCCCCAACTTTGAGTTTGCCACAGAGACTCACGAGGAGCTTCTCTATGACAAAGAAAAGTTGCTCGAGAACGGAGACCGCTGGGAGACCGAGATTGCAGAGAACCTCAGATCTGAAAGTCTCTATCGCTGA 669 46.79 MAAILARKSLLALRARQPAISGQALQGSRFHDLRSSAHLYSTKREDEEREQLAKEMSKDWSSIFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6986629 6990172 + CmaCh19G006660.1 Cma19g00666 315354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00666 222 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 162 173 IPR017900 -
Cma19g00666 222 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 123 134 IPR017900 -
Cma19g00666 222 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 153 182 IPR017896 -
Cma19g00666 222 Pfam 4Fe-4S dicluster domain 122 176 IPR017896 -
Cma19g00666 222 Gene3D - 96 221 - -
Cma19g00666 222 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 1 222 IPR010226 GO:0016020|GO:0016651|GO:0051539
Cma19g00666 222 SUPERFAMILY 4Fe-4S ferredoxins 96 206 - -
Cma19g00666 222 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 70 206 IPR010226 GO:0016020|GO:0016651|GO:0051539
Cma19g00666 222 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 1 222 - -
Cma19g00666 222 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 114 143 IPR017896 -
Cma19g00666 222 TIGRFAM NuoI: NADH-quinone oxidoreductase, chain I 79 200 IPR010226 GO:0016020|GO:0016651|GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00666 K03941 NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2] - csv:101219679 408.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00824 Cma-Chr12:6078467 Cma19g00666 Cma-Chr19:6986629 9.14E-16 dispersed
Cma03g00630 Cma-Chr3:5446790 Cma19g00666 Cma-Chr19:6986629 2.90E-07 transposed
Cma08g00952 Cma-Chr8:5949776 Cma19g00666 Cma-Chr19:6986629 2.17E-10 transposed
Cma11g01096 Cma-Chr11:6076347 Cma19g00666 Cma-Chr19:6986629 1.14E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g591 . . . . . . . . Cmo19g00680 . . . . . Sed04g3932 Cpe04g00120 Cpe15g00540 Bhi05g01230 Tan02g0799 Cmetu01g2454 . Hepe02g0508 . . Cla02g00522 Cam02g0540 . Cco02g0547 Clacu02g0541 Cmu02g0536 Cre02g0867 Cone12ag1151 Cone8ag1201 . . . . . Cme01g01422 . . . . Bpe15g00868 . . . . . . . Cma19g00666 . Car19g00509 . . . . . . . . . . . . . . . . Lsi11g01103 . Chy01g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010764 0 1 0 0 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00666 Cma_Chr19 FPKM 25.237064 27.644501 30.244123 28.707743 27.472496 28.832386 28.317886 32.669857 31.09067 30.963387