Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00667 ATGTTATCTTCTTCATCTTTATACTCCAACCCACATCCCCACCTCCGTCCTCTTCATTTCCGCCCTCCCAATCCTCTCTCCAATGTCGTCCTCCACCTCCCCTCCAACCAGAAACCCAACGCCACCGTCGCCTCCGCTGATCTCCGCCGCAACAATCCCAAAGAAAAACCATCCACCAACGTCTCCGATCCTATCCAGCTGGAACCCCGCAAACACAACTCCAAATCCGCCGCCCTTGTCAACCAGTACCTATCATCCGGCGAATCGCCAAATCCACAAAACCTAGAACCCCCATTGCCCGAAGAAGAGAAAGTGAAGCTTCTCGAACTCTCGCTTGTGAGAAAACGAACCCCTCAATTTCCTGGATCGATTTATGTTCAATCCCCGAGTGATTCCGATGTGGGTTCTTCTCTCCCTCCCCTACAATCTCTGTTTCGAAATGCAGGAAGTGAGTTTCATGGTGAAGATGACCGGAAGATAATAAGGAGAGCTCTAGAGATTCGCCGGAAGGTGACCTCCGAGATCTTCAAGGAGGCGATGCGGAAAGGGAAATTTGGAATCACTTACACCGACAATCTCCTTGGTTGGTTGTCTGATTTCATCGATTTTGTAATGATTCAAGCGGCGTCGATGAAGCAGTTGCCTGAGTTTGCTCATTTGTCGTTCAATCTTCGTGCCAAGACCGTTATTGAAGAATCAAATGTTGTACCTCTTATCAGGTGGTTGAAGCATAACTCATTGTCATATCCACAGATAGGTAAGCTCATATGCATGTCTAAGGGAAAGCTTGAATCCATTAGACGTCTTGTGGAATGGCTGAAGGGGATTCATGTAAAGGGGGGATATCTTGGACTTACACTCACTAAAGCTGGAGGGAATATATTGGAACGCAGCAATGATGAACTTGATGAAATTGTGAGCTACTTGGAGAGTAATGGAGTTAGAATGGTTTGGATTGGCTTTGTTATGAGTCGATGCCCTTATTTGCTGTCTTACAGTTTGGAAGAACTGAAAGCTCGTGTGGAGTTCTTCTTAAATATGGGTATGAATGGGAAAGACTTTGGCACAATGGTCTTTGATTTCCCTAAGGTGCTTGGTCAGTATACTCTTGAAGATATGAACCAAAAGGTCAACTATTTAAAGGAGTTCGGGCTTGAGATTGAGGATATAGGCAGATTACTTGCATACAAACCACAGTTGATGAATGGTAGCATTGAGGGGAAATGGAAGCCTCTTGTTAAGTACTTCTACTATCTTGGAATTTCCAAAGAGGGTTTGAGGAGGATGCTTACAATAAAGCCAGTGGTTTTCTGCCTTGATCTGGAGACCATCATTGTGCCGAAGGTGCAATTCTTCAGAGATATAGGAGTTCGAGATGACGGGATTAGTAACATGCTTGTGAAATTTCCATCGTTATTGACATTCAGCCTGTACAAGAAAATCCGTCCTGTTGTCATATTCTTGATGACTAAAGCAGGAGTCAGGGAGAAAGACATTGGGAAAGTTGTAGCTTTGGGACCGGAACTTTTTGGTTATAGCATAGTGCATAAGCTTGAGGTCAATCTAAAGTATTTTCTGTCACTCGGCATACATACCCGGACTCTAGGAGAAATGATTGCTGATTTTCCTATGCTGCTACGATATAATATCGACATTCTTCGACCAAAGTATCAATATTTGCGGAGAACCATGGTTCGCCCTCTGCAAGATATTATAGACTTTCCAAGGTTTTTCAGCTATTCTCTGGAGGGGCGCATCATTCCTAGGCATCAAGTTCTGGTTGAGAATCGTATAAATATCAATCTGCGTTCCATGTTAGCTTGCACAGATGAAGAGTTTAAGAACAAGGTTGCAGATATAGTGGAAAAACGCCAAAGATTTGAATCCGGTAATGTGGATGGTTCTCTCTCTGTTCATACGACTCACAACTCTATCGACTCGACTACACTAGATGACTCGTCGGGTGAAACTATAGAAGATTGA 1983 43.97 MLSSSSLYSNPHPHLRPLHFRPPNPLSNVVLHLPSNQKPNATVASADLRRNNPKEKPSTNVSDPIQLEPRKHNSKSAALVNQYLSSGESPNPQNLEPPLPEEEKVKLLELSLVRKRTPQFPGSIYVQSPSDSDVGSSLPPLQSLFRNAGSEFHGEDDRKIIRRALEIRRKVTSEIFKEAMRKGKFGITYTDNLLGWLSDFIDFVMIQAASMKQLPEFAHLSFNLRAKTVIEESNVVPLIRWLKHNSLSYPQIGKLICMSKGKLESIRRLVEWLKGIHVKGGYLGLTLTKAGGNILERSNDELDEIVSYLESNGVRMVWIGFVMSRCPYLLSYSLEELKARVEFFLNMGMNGKDFGTMVFDFPKVLGQYTLEDMNQKVNYLKEFGLEIEDIGRLLAYKPQLMNGSIEGKWKPLVKYFYYLGISKEGLRRMLTIKPVVFCLDLETIIVPKVQFFRDIGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAGVREKDIGKVVALGPELFGYSIVHKLEVNLKYFLSLGIHTRTLGEMIADFPMLLRYNIDILRPKYQYLRRTMVRPLQDIIDFPRFFSYSLEGRIIPRHQVLVENRININLRSMLACTDEEFKNKVADIVEKRQRFESGNVDGSLSVHTTHNSIDSTTLDDSSGETIED 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6990266 6994663 - CmaCh19G006670.1 Cma19g00667 315355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00667 660 MobiDBLite consensus disorder prediction 632 652 - -
Cma19g00667 660 PANTHER CGI-12 PROTEIN-RELATED 84 637 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 Pfam mTERF 258 443 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 Pfam mTERF 306 614 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 500 531 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 355 386 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 536 566 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 391 422 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 463 495 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 320 350 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 SMART mt_12 568 599 IPR003690 GO:0003690|GO:0006355
Cma19g00667 660 MobiDBLite consensus disorder prediction 42 75 - -
Cma19g00667 660 MobiDBLite consensus disorder prediction 1 21 - -
Cma19g00667 660 Gene3D Transcription termination factor 3, mitochondrial 397 627 IPR038538 -
Cma19g00667 660 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 84 637 - -
Cma19g00667 660 MobiDBLite consensus disorder prediction 632 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00667 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101220316 1102.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00667 Cma-Chr19:6990266 Cma13g00515 Cma-Chr13:5451093 5.08E-12 dispersed
Cma01g00688 Cma-Chr1:3583872 Cma19g00667 Cma-Chr19:6990266 2.52E-10 transposed
Cma06g01761 Cma-Chr6:10742087 Cma19g00667 Cma-Chr19:6990266 3.29E-08 transposed
Cma12g01031 Cma-Chr12:8190989 Cma19g00667 Cma-Chr19:6990266 9.72E-17 transposed
Cma14g01107 Cma-Chr14:8138281 Cma19g00667 Cma-Chr19:6990266 1.52E-16 transposed
Cma19g00826 Cma-Chr19:7861147 Cma19g00667 Cma-Chr19:6990266 4.78E-17 transposed
Cma11g01784 Cma-Chr11:11933514 Cma19g00667 Cma-Chr19:6990266 8.79E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36899 PF02536 mTERF 1.60E-65 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00667 Cma_Chr19 FPKM 1.320508 1.615435 2.332217 1.784898 8.950347 7.882956 10.811872 2.000583 2.646855 2.749879