Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00683 ATGGGCGATACCCGAGGTGGTTGCTGTCCATCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTGGTGCAGCTCATCATTCCCATCGAGTCTGCGCATCGCACTATCTCCTACCTTGGTGATCTCGGCCTTCTCCAATTCAAAGATCTCAATGCCGAAAAAAGCCCGTTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAAATGTTGAAGGCTGGGTTGCCAAGCAAAAGCTCCATTTCACAAGTTGATATCAATATAGATGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCAGAACTGATTGAGATAAATGCTAATAGTGAGAAGCTACAGCGTTCTTACAATGAACTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGACTTTTTCGGTGCAGCGCAAAGCAGTGCCATAGAGCAGCAAAGAGAGTTTGAATCAAGACGAGTTGGTGGAGATTCAATAGAAGTTCCATTGTTATTGGAACAACTCAATGCCGAAAAAAGCCCGTTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAAATGTTGAAGGCTGGGTTGCCAAGCAAAAGCTCCATTTCACAAGTTGATATCAATATAGGTGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCAGAACTGATTGAGATAAATGCTAATAGTGAGAAGCTACAGCGTTCTTACAATGAACTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGACTTTTTCGGTGCAGCGCAAAGCAGTGCCATAGAGCAGCAAAGAGAGTTTGAATCAAGACGAGTTGGTGGAGATTCAATAGAAGTTCCATTGTTATTGGAACAAGAATCATCTGTGGATCAGTCAAAGCCGGTTAATTTGGGATTTCTTTCTGGTCTTGTTCCTCGGGGAAAATCTATGGCATTTGAGAGGATACTTTTTCGTGCTACCAGGGGTAATGTGTTTCTGAAGCAGGCTGTAGTTGAGGATCCTGTTCCAGATCCTATCTCTGGAGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTCTATTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGGCGTTTGGAGCAAATCGATACCCTTTTACTGAGGACTTGGGGAAACAATCCCAAATGATTGCCGAGGTTTCTGGAAAACTGGCTGAGCTGAAGACTACCATAGATGTAGGGCTGCTGCACCGGGCTAATCTATTGCAGACTATTAGAGAACATTTTGAAAATTGGAATCTCTTGGCGAGGAAGGAAAAATCCATATACCATATCTTGAACATGCTTAGCCTTGATGTAACCAAACAATGTCTGGTTGCGGAGGGGTGGGGTCCTGTTTTTGCAACAAAACAGATTCAGGAAGCACTCCAGCGAGCAGCATCTGATTCCAACTCCCAAGTTGGAGCAATTTTCCAGGTTTTATTAACTACAGAAGCACCGCCTACTTATTTTCGGACAAACAAATTCTCCACTGCTTTTCAAGAAATTGTTGATGCATATGGGGTGGCAAAGTATCAAGAAGCCAATCCTGGTGTATATACCATCGTCACGTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGGATATGTCTGTTACTTGCAACACTGTATTTTATATTGCGGGAAAAGAAACTTTCCTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTCGGTGGACGCTATGTCATTTTAATGATGTCACTATTTTCAATATACACAGGTCTGATCTATAATGAGTTCTTCTCGGTCCCATTTGAACTGTTTGGTCGCTCAGCCTATGCATGTCGTAGTCCTGATTGCAGTGATTCTACCACTGTGGGGTTGATAAAGGCGGGTTCTACATATCCGTTTGGCTTGGATCCTGTATGGCATGGTACTCGAAGTGAGCTTCCATTTCTTAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCAAGAACAGCATCAATATTTGGTTCCAATTCCTGCCACAAATGATATTTCTGAACAGCCTTTTCGGCTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGTTCGAACGCTGATCTGTACCACGTAATGATATACATGTTTCTCGGCCCCACTGAAGATCTGGCTGAAAATCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTGCTCTTACTGGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTCCAAGGCCAGTCTTATGCGCCTCTTCCAAGTGGTGATGATTCCCTTGAGTTGGATTCGCATCACGATTCACATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTTGTGCATCAACTTATACATACCATTGAATTTGTGCTTGGAGCAGTTTCAAACACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCGCACTCAGAGTTATCGAGCGTGTTTTATGACAAGGTTCTCGTTCTATCTGCGGGGTTCAACAACATTGTAATCTTAATAGTAGGCATCATTGTTTTCATTTTCGCTACCGTTGGTGTGTTGCTGTTGATGGAGACTTTAAGTGCTTTCCTTCACGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGCTACAAATTCCTTCCTTTCTCATTTGCATTGCTAGATGAAGATGATGAATAA 2841 42.98 MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLPSKSSISQVDINIDDLEVKLGELEAELIEINANSEKLQRSYNELVEYKLVLQKAGDFFGAAQSSAIEQQREFESRRVGGDSIEVPLLLEQLNAEKSPFQRTYAAQIKRCGEMARKLNFFKEQMLKAGLPSKSSISQVDINIGDLEVKLGELEAELIEINANSEKLQRSYNELVEYKLVLQKAGDFFGAAQSSAIEQQREFESRRVGGDSIEVPLLLEQESSVDQSKPVNLGFLSGLVPRGKSMAFERILFRATRGNVFLKQAVVEDPVPDPISGEKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFTEDLGKQSQMIAEVSGKLAELKTTIDVGLLHRANLLQTIREHFENWNLLARKEKSIYHILNMLSLDVTKQCLVAEGWGPVFATKQIQEALQRAASDSNSQVGAIFQVLLTTEAPPTYFRTNKFSTAFQEIVDAYGVAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRSAYACRSPDCSDSTTVGLIKAGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFKNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTEDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKKQHEQRFQGQSYAPLPSGDDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIVILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFLPFSFALLDEDDE 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7079317 7092700 - CmaCh19G006830.1 Cma19g00683 315371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00683 946 PANTHER VACUOLAR PROTON ATPASES 177 946 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma19g00683 946 PIRSF ATP6V0A1 10 171 IPR026028 GO:0000220|GO:0046961
Cma19g00683 946 PIRSF ATP6V0A1 171 946 IPR026028 GO:0000220|GO:0046961
Cma19g00683 946 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 177 946 - -
Cma19g00683 946 Coils Coil 93 127 - -
Cma19g00683 946 Pfam V-type ATPase 116kDa subunit family 176 938 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma19g00683 946 Pfam V-type ATPase 116kDa subunit family 38 158 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma19g00683 946 PANTHER VACUOLAR PROTON ATPASES 4 177 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma19g00683 946 Coils Coil 221 255 - -
Cma19g00683 946 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 4 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00280 Cma-Chr5:1191411 Cma19g00683 Cma-Chr19:7079317 3.06E-18 dispersed
Cma19g00683 Cma-Chr19:7079317 Cma20g00461 Cma-Chr20:2208366 8.83E-51 dispersed
Cma11g01088 Cma-Chr11:5976677 Cma19g00683 Cma-Chr19:7079317 9.55E-105 wgd
Cma12g00431 Cma-Chr12:2249053 Cma19g00683 Cma-Chr19:7079317 6.84E-67 wgd
Cma19g00683 Cma-Chr19:7079317 Cma05g00279 Cma-Chr5:1187764 2.03E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00683 K02154 - csv:101211364 1399.42