Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00684 ATGGCCAACATCACTGACGGTCTCCCGCCGAATTTCTCTTCTTCACTTCCAGCTGCAATGGCGTCCGATTCTTCTCCAGTTAACTTCAATTCAGGTCCTTCGTCGCCTGGTGATTCATTCTCTAGTCCCATTGGAAACACCGTCTCATCTTCAGGAGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATTACTACGCCGCCGCGTCAACGATCTCGAATGGTCTCGTCGGAAACTACTCCGAAGGCTACGGAGTCGCGCTCGCGTCGGGAGGGAGGTGGGAGAAGAGCGTCCGGAGGTGGAGCGACCCCGATGGCTGCTACACCTTCATCGACGGATGATATTCCGCCGTCGACGGAACCTGGCGACGGCGACGACATGGATGAGGATCATCCGACCTTCGTATGGGGGACGAATATCAGTGTTGACGATGTGAAGGGAGCGATCATTCGGTTTTTGAGGCATTTCCGCGGTCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATACGCGGAGGCAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTATCCTCTCGAGGTTCTCGCAATTTTTGACATTGTTCTAATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAACCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATAATACGGTGTAGTTCCATAATTCCTGAGATAAGGGAGGCGATGTTTAGATGTCTCGTATGTGGATACTACACTGACCCAGTAGCTATTGAGAGAGGTCAAATAACTGAACCCACTATATGCTTGAAGGAAGAATGCCAAGCAAGAAACTCCATGACATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTACGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACACCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTATAGGGCCATGAGTGTGAGAATTGGACCAACCCAGAGAACTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCGAGAATGGTGGCTGAAGACCCAACTGGAGCTGAGAACCGGTTGGGTGGAAATGTCGATGATGTTTCGTTTGATGAAGCGAAGGTGGAGGAGTTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTAACCAGATCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTCGGTGGGAGTGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAATTGAAATTGGCATCCGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTATCTCCCCGCGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACCAAAGATCCTGAAACTGGGGAAACAGTACTGGAGAGTGGGGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGTATGTTGCATGAGGTGATGGAGCAACAAACTGTTTCAATAGCGAAGGCTGGAATCATTGCTTCCCTTAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTATCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCGCACTACACTTCGACAACCCAGAGGGCATTGAGCAGGATTTCATGGACCTTCATACCTTGACTTCATACATCAGCTATGCTAGGAAAAACATTCACCCAAAATTATCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATAACAGCTACTCCCAGACAGATTGAGAGTTTAATACGTTTAAGCGAAGCCCTTGCTCGTATACGTTTCTCAGAATGGGTTGAAAAGGGCGATGTTCTTGAGGCATTCCGGCTTCTGGAAGTTGCAATGCAGCAGTCTGCAACCGATCATTCTACAGGAACCATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGTGAACGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAATATAATCATGGAGAAAATGCAGCTCGGAGGGCCTTCCATCCGCCTGTCAGAGTTGCTGGATGAGCTGAAGAAACAGAATCCTGATAACGAAGTCCATCTCAACAACCTTAGAAATGCGGTATCAACACTTGCAAGCGAGGGATTTGTAGCGATCCATGGTGATAGCATAAAGAGAATGTGA 2655 46.4 MANITDGLPPNFSSSLPAAMASDSSPVNFNSGPSSPGDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEITTPPRQRSRMVSSETTPKATESRSRREGGGRRASGGGATPMAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRGRQASQSEGDFHTEGKYAEAIKRVLEIEGDSLDVDAQDVFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAMFRCLVCGYYTDPVAIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMVAEDPTGAENRLGGNVDDVSFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGIEIGIRFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFDNPEGIEQDFMDLHTLTSYISYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSIRLSELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRM 884
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
19 7093951 7099507 - CmaCh19G006840.1 Cma19g00684 315372
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00684 884 SMART mcm 251 788 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 Pfam MCM P-loop domain 442 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 Pfam MCM P-loop domain 512 684 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 109 508 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein family signature 515 530 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein family signature 603 616 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein family signature 575 589 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein family signature 627 639 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein family signature 654 662 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 788 797 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 277 290 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 636 653 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 470 481 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 328 340 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 800 IPR027417 -
Cma19g00684 884 MobiDBLite consensus disorder prediction 65 87 - -
Cma19g00684 884 Pfam MCM OB domain 255 384 IPR033762 -
Cma19g00684 884 Gene3D - 793 875 IPR036388 -
Cma19g00684 884 Gene3D - 282 334 - -
Cma19g00684 884 Gene3D - 432 510 IPR027417 -
Cma19g00684 884 Pfam MCM N-terminal domain 153 251 IPR027925 -
Cma19g00684 884 ProSiteProfiles MCM family domain profile. 454 680 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 512 883 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cma19g00684 884 MobiDBLite consensus disorder prediction 1 138 - -
Cma19g00684 884 Gene3D - 144 250 - -
Cma19g00684 884 CDD MCM4 457 786 - -
Cma19g00684 884 Gene3D - 511 792 IPR027417 -
Cma19g00684 884 Gene3D - 255 394 IPR012340 -
Cma19g00684 884 ProSitePatterns MCM family signature. 583 591 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cma19g00684 884 Coils Coil 844 864 - -
Cma19g00684 884 SUPERFAMILY Nucleic acid-binding proteins 171 405 IPR012340 -
Cma19g00684 884 MobiDBLite consensus disorder prediction 1 53 - -
Cma19g00684 884 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 109 508 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 512 883 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma19g00684 884 Pfam MCM AAA-lid domain 700 786 IPR041562 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01388 Cma-Chr3:8775195 Cma19g00684 Cma-Chr19:7093951 1.02E-08 dispersed
Cma06g01755 Cma-Chr6:10703085 Cma19g00684 Cma-Chr19:7093951 1.29E-101 dispersed
Cma07g00004 Cma-Chr7:39056 Cma19g00684 Cma-Chr19:7093951 1.38E-111 dispersed
Cma08g00472 Cma-Chr8:2658734 Cma19g00684 Cma-Chr19:7093951 2.65E-107 dispersed
Cma14g01060 Cma-Chr14:5671365 Cma19g00684 Cma-Chr19:7093951 4.89E-103 dispersed
Cma17g01031 Cma-Chr17:7473100 Cma19g00684 Cma-Chr19:7093951 4.86E-110 dispersed
Cma11g01087 Cma-Chr11:5968219 Cma19g00684 Cma-Chr19:7093951 2.04E-144 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00684 K02212 - csv:101211850 1503.03