Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma19g00684 | ATGGCCAACATCACTGACGGTCTCCCGCCGAATTTCTCTTCTTCACTTCCAGCTGCAATGGCGTCCGATTCTTCTCCAGTTAACTTCAATTCAGGTCCTTCGTCGCCTGGTGATTCATTCTCTAGTCCCATTGGAAACACCGTCTCATCTTCAGGAGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATTACTACGCCGCCGCGTCAACGATCTCGAATGGTCTCGTCGGAAACTACTCCGAAGGCTACGGAGTCGCGCTCGCGTCGGGAGGGAGGTGGGAGAAGAGCGTCCGGAGGTGGAGCGACCCCGATGGCTGCTACACCTTCATCGACGGATGATATTCCGCCGTCGACGGAACCTGGCGACGGCGACGACATGGATGAGGATCATCCGACCTTCGTATGGGGGACGAATATCAGTGTTGACGATGTGAAGGGAGCGATCATTCGGTTTTTGAGGCATTTCCGCGGTCGTCAGGCGTCGCAGTCTGAGGGGGATTTTCATACCGAGGGAAAATACGCGGAGGCAATCAAGCGGGTTCTTGAAATTGAAGGGGATTCGCTCGATGTGGATGCGCAGGATGTGTTCAATTACGATACGGATTTATACACGAAGATGGTGAGGTATCCTCTCGAGGTTCTCGCAATTTTTGACATTGTTCTAATGGAAATGGTGCCCCAAATCAACCCATTGTTCGAAAAGCACATTCAAACTCGGATATTCAATCTCAGAACTTCTACTTCAATGAGAAACCTTAACCCATCTGACATTGAGAGGATGGTATCACTGAAGGGAATGATAATACGGTGTAGTTCCATAATTCCTGAGATAAGGGAGGCGATGTTTAGATGTCTCGTATGTGGATACTACACTGACCCAGTAGCTATTGAGAGAGGTCAAATAACTGAACCCACTATATGCTTGAAGGAAGAATGCCAAGCAAGAAACTCCATGACATTGGTTCACAATCGATGCAGGTTTGCTGATAAGCAGATTGTACGGCTTCAGGAGACTCCTGATGAGATACCTGAAGGAGGGACACCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTATAGGGCCATGAGTGTGAGAATTGGACCAACCCAGAGAACTGTAAAATCATTATTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCGAGAATGGTGGCTGAAGACCCAACTGGAGCTGAGAACCGGTTGGGTGGAAATGTCGATGATGTTTCGTTTGATGAAGCGAAGGTGGAGGAGTTGAAAGAACTCTCCAAAAAGCCTGATATATATGACAGACTAACCAGATCATTGGCACCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTCGGTGGGAGTGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAATTGAAATTGGCATCCGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATACATACATAAACTATCTCCCCGCGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTCACCAAAGATCCTGAAACTGGGGAAACAGTACTGGAGAGTGGGGCCTTGGTTTTGAGTGACAGGGGCATATGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGTATGTTGCATGAGGTGATGGAGCAACAAACTGTTTCAATAGCGAAGGCTGGAATCATTGCTTCCCTTAATGCCAGAACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAACCCTCGCCTATCTGTGATTGATAACATACACCTTCCTCCTACTTTGTTATCAAGGTTTGACTTGATTTATTTAATTCTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTTGCTAAGCATATTGTCGCACTACACTTCGACAACCCAGAGGGCATTGAGCAGGATTTCATGGACCTTCATACCTTGACTTCATACATCAGCTATGCTAGGAAAAACATTCACCCAAAATTATCAGATGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGGAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATAACAGCTACTCCCAGACAGATTGAGAGTTTAATACGTTTAAGCGAAGCCCTTGCTCGTATACGTTTCTCAGAATGGGTTGAAAAGGGCGATGTTCTTGAGGCATTCCGGCTTCTGGAAGTTGCAATGCAGCAGTCTGCAACCGATCATTCTACAGGAACCATTGACATGGATCTGATCACCACGGGAGTATCGGCAAGTGAACGGATGCGAAGGGAGAGTTTATTATCGGCAACTCGCAATATAATCATGGAGAAAATGCAGCTCGGAGGGCCTTCCATCCGCCTGTCAGAGTTGCTGGATGAGCTGAAGAAACAGAATCCTGATAACGAAGTCCATCTCAACAACCTTAGAAATGCGGTATCAACACTTGCAAGCGAGGGATTTGTAGCGATCCATGGTGATAGCATAAAGAGAATGTGA | 2655 | 46.4 | MANITDGLPPNFSSSLPAAMASDSSPVNFNSGPSSPGDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEITTPPRQRSRMVSSETTPKATESRSRREGGGRRASGGGATPMAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRGRQASQSEGDFHTEGKYAEAIKRVLEIEGDSLDVDAQDVFNYDTDLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAMFRCLVCGYYTDPVAIERGQITEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMVAEDPTGAENRLGGNVDDVSFDEAKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGSALKLASGASFRGDINILLVGDPGIEIGIRFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFDNPEGIEQDFMDLHTLTSYISYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLSATRNIIMEKMQLGGPSIRLSELLDELKKQNPDNEVHLNNLRNAVSTLASEGFVAIHGDSIKRM | 884 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 7093951 | 7099507 | - | CmaCh19G006840.1 | Cma19g00684 | 315372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma19g00684 | 884 | SMART | mcm | 251 | 788 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | Pfam | MCM P-loop domain | 442 | 508 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | Pfam | MCM P-loop domain | 512 | 684 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 109 | 508 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 515 | 530 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 603 | 616 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 575 | 589 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 627 | 639 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 654 | 662 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 788 | 797 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 277 | 290 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 636 | 653 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 470 | 481 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 328 | 340 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 466 | 800 | IPR027417 | - | |
| Cma19g00684 | 884 | MobiDBLite | consensus disorder prediction | 65 | 87 | - | - | |
| Cma19g00684 | 884 | Pfam | MCM OB domain | 255 | 384 | IPR033762 | - | |
| Cma19g00684 | 884 | Gene3D | - | 793 | 875 | IPR036388 | - | |
| Cma19g00684 | 884 | Gene3D | - | 282 | 334 | - | - | |
| Cma19g00684 | 884 | Gene3D | - | 432 | 510 | IPR027417 | - | |
| Cma19g00684 | 884 | Pfam | MCM N-terminal domain | 153 | 251 | IPR027925 | - | |
| Cma19g00684 | 884 | ProSiteProfiles | MCM family domain profile. | 454 | 680 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 512 | 883 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cma19g00684 | 884 | MobiDBLite | consensus disorder prediction | 1 | 138 | - | - | |
| Cma19g00684 | 884 | Gene3D | - | 144 | 250 | - | - | |
| Cma19g00684 | 884 | CDD | MCM4 | 457 | 786 | - | - | |
| Cma19g00684 | 884 | Gene3D | - | 511 | 792 | IPR027417 | - | |
| Cma19g00684 | 884 | Gene3D | - | 255 | 394 | IPR012340 | - | |
| Cma19g00684 | 884 | ProSitePatterns | MCM family signature. | 583 | 591 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cma19g00684 | 884 | Coils | Coil | 844 | 864 | - | - | |
| Cma19g00684 | 884 | SUPERFAMILY | Nucleic acid-binding proteins | 171 | 405 | IPR012340 | - | |
| Cma19g00684 | 884 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Cma19g00684 | 884 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 109 | 508 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 512 | 883 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cma19g00684 | 884 | Pfam | MCM AAA-lid domain | 700 | 786 | IPR041562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g01388 | Cma-Chr3:8775195 | Cma19g00684 | Cma-Chr19:7093951 | 1.02E-08 | dispersed | |
| Cma06g01755 | Cma-Chr6:10703085 | Cma19g00684 | Cma-Chr19:7093951 | 1.29E-101 | dispersed | |
| Cma07g00004 | Cma-Chr7:39056 | Cma19g00684 | Cma-Chr19:7093951 | 1.38E-111 | dispersed | |
| Cma08g00472 | Cma-Chr8:2658734 | Cma19g00684 | Cma-Chr19:7093951 | 2.65E-107 | dispersed | |
| Cma14g01060 | Cma-Chr14:5671365 | Cma19g00684 | Cma-Chr19:7093951 | 4.89E-103 | dispersed | |
| Cma17g01031 | Cma-Chr17:7473100 | Cma19g00684 | Cma-Chr19:7093951 | 4.86E-110 | dispersed | |
| Cma11g01087 | Cma-Chr11:5968219 | Cma19g00684 | Cma-Chr19:7093951 | 2.04E-144 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma19g00684 | K02212 | - | csv:101211850 | 1503.03 |