Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00687 ATGAAGATCCGTTGCGATGTTTGTGATCAGGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCCAACAAGCTCGCTGGAAAGCACTCACGATTCTCCTTAATTCAGCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGTCGCGCGCTCGTTTTCTGTCAACAAGATAGGGCAATTATTTGCAGAGAATGCGACATTTCGATCCACGAAACGAACGAACATACGCAGAAGCATAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTCCCAAACATCTTCGTCCTCCCATGGCTGCGATGCGGCCATGGATGTTAAAACTGGAAGCTCTCACGCTTGCAGCAAGAGGCCTAAAATGGCCGTGAAGGCAATCAGCTCTCATTCCGCTGAAAAAGCTGCTCCATCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCCTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGAATGGTGCTTGGAGGAATTTCTCGATCCTTCCGCCGTTGCCAATCACTTCTGTAAGCTTAATGCATTTGCGAATCAGAATCTGGAGAGCCAGCAAGAATCGTTAGGCACCGTCAGATTTGGCAACACCTCGAAATTTTTTGGTAAATTTTCTCAAACTACATCTTGGAATGGAGCTAAAATCTCCATGAAAACTTGTAAAGATGAAAAAATGGCACGGTTGCTGATCAGATCATCAGCAGCTTCGGATCTGAAACAAATCTGGTAA 828 46.74 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLIQPIKKDSPRCDICQERRALVFCQQDRAIICRECDISIHETNEHTQKHSRFLLTGVKLSSTCFSSQTSSSSHGCDAAMDVKTGSSHACSKRPKMAVKAISSHSAEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPEWCLEEFLDPSAVANHFCKLNAFANQNLESQQESLGTVRFGNTSKFFGKFSQTTSWNGAKISMKTCKDEKMARLLIRSSAASDLKQIW 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7115841 7117491 + CmaCh19G006870.1 Cma19g00687 315375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00687 275 MobiDBLite consensus disorder prediction 147 172 - -
Cma19g00687 275 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cma19g00687 275 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Cma19g00687 275 Gene3D Classic Zinc Finger 1 100 - -
Cma19g00687 275 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 213 - -
Cma19g00687 275 CDD Bbox1_BBX-like 5 47 - -
Cma19g00687 275 MobiDBLite consensus disorder prediction 151 172 - -
Cma19g00687 275 CDD Bbox1_BBX-like 58 100 - -
Cma19g00687 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 213 - -
Cma19g00687 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cma19g00687 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma19g00687 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cma19g00687 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00687 Cma20g00817 CCT
Cma19g00687 Cma20g00817 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00607 Cma-Chr17:5142890 Cma19g00687 Cma-Chr19:7115841 1.47E-34 dispersed
Cma11g01083 Cma-Chr11:5944389 Cma19g00687 Cma-Chr19:7115841 8.30E-124 wgd
Cma12g00429 Cma-Chr12:2230092 Cma19g00687 Cma-Chr19:7115841 4.28E-55 wgd
Cma19g00687 Cma-Chr19:7115841 Cma20g00817 Cma-Chr20:3862961 3.99E-65 wgd
Cma19g00687 Cma-Chr19:7115841 Cma05g00283 Cma-Chr5:1210628 1.01E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36904 PF00643 zf-B_box 4.00E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00687 - - cmax:111469932 408.297