Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00687 ATGAAGATCCGTTGCGATGTTTGTGATCAGGCTGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCCAACAAGCTCGCTGGAAAGCACTCACGATTCTCCTTAATTCAGCCGATCAAAAAGGATTCTCCTCGTTGCGATATCTGTCAGGAACGTCGCGCGCTCGTTTTCTGTCAACAAGATAGGGCAATTATTTGCAGAGAATGCGACATTTCGATCCACGAAACGAACGAACATACGCAGAAGCATAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTCCCAAACATCTTCGTCCTCCCATGGCTGCGATGCGGCCATGGATGTTAAAACTGGAAGCTCTCACGCTTGCAGCAAGAGGCCTAAAATGGCCGTGAAGGCAATCAGCTCTCATTCCGCTGAAAAAGCTGCTCCATCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCCTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGAATGGTGCTTGGAGGAATTTCTCGATCCTTCCGCCGTTGCCAATCACTTCTGTAAGCTTAATGCATTTGCGAATCAGAATCTGGAGAGCCAGCAAGAATCGTTAGGCACCGTCAGATTTGGCAACACCTCGAAATTTTTTGGTAAATTTTCTCAAACTACATCTTGGAATGGAGCTAAAATCTCCATGAAAACTTGTAAAGATGAAAAAATGGCACGGTTGCTGATCAGATCATCAGCAGCTTCGGATCTGAAACAAATCTGGTAA 828 46.74 MKIRCDVCDQAEASVFCYADEAALCHGCDLHVHRANKLAGKHSRFSLIQPIKKDSPRCDICQERRALVFCQQDRAIICRECDISIHETNEHTQKHSRFLLTGVKLSSTCFSSQTSSSSHGCDAAMDVKTGSSHACSKRPKMAVKAISSHSAEKAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPEWCLEEFLDPSAVANHFCKLNAFANQNLESQQESLGTVRFGNTSKFFGKFSQTTSWNGAKISMKTCKDEKMARLLIRSSAASDLKQIW 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7115841 7117491 + CmaCh19G006870.1 Cma19g00687 315375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00687 275 MobiDBLite consensus disorder prediction 147 172 - -
Cma19g00687 275 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cma19g00687 275 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Cma19g00687 275 Gene3D Classic Zinc Finger 1 100 - -
Cma19g00687 275 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 213 - -
Cma19g00687 275 CDD Bbox1_BBX-like 5 47 - -
Cma19g00687 275 MobiDBLite consensus disorder prediction 151 172 - -
Cma19g00687 275 CDD Bbox1_BBX-like 58 100 - -
Cma19g00687 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 213 - -
Cma19g00687 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cma19g00687 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma19g00687 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cma19g00687 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00687 - - - cmax:111469932 408.297
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00687 Cma20g00817 CCT
Cma19g00687 Cma20g00817 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00607 Cma-Chr17:5142890 Cma19g00687 Cma-Chr19:7115841 1.47E-34 dispersed
Cma11g01083 Cma-Chr11:5944389 Cma19g00687 Cma-Chr19:7115841 8.30E-124 wgd
Cma12g00429 Cma-Chr12:2230092 Cma19g00687 Cma-Chr19:7115841 4.28E-55 wgd
Cma19g00687 Cma-Chr19:7115841 Cma20g00817 Cma-Chr20:3862961 3.99E-65 wgd
Cma19g00687 Cma-Chr19:7115841 Cma05g00283 Cma-Chr5:1210628 1.01E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00377 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.4 2.5e-45 180.3
Cma12g00377 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 1.5e-42 171.0
Cma05g00338 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 5.3e-83 305.4
Cma12g00377 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 59.2 1.9e-77 287.0
Cma11g00415 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 2.5e-56 216.9
Cma10g00418 CCT,CST 75 429 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.5e-53 207.6
Cma11g00415 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.2e-64 243.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 3.2e-91 332.8
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.1e-87 318.2
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.1e-87 318.2
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.9 1.1e-83 307.8
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma11g01083 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.7 4.4e-52 202.6
Cma19g00687 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.7e-48 190.7
Cma04g00659 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 54.7 3.7e-56 216.1
Cma16g00606 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.4 7.6e-56 214.2
Cma07g00442 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.1e-49 191.8
Cma03g00703 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cma16g00606 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 64.0 1.5e-57 219.9
Cma07g00442 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.3e-50 196.8
Cma03g00703 CST 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 65.0 2.8e-48 189.1
Cma11g01083 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 1.5e-52 203.8
Cma19g00687 CCT,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 6.7e-50 194.9
Cma12g00429 CCT,CST,ECH 26 231 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
Cma05g00283 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 4.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36904 PF00643 zf-B_box 4.00E-07 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00687 Cma_Chr19 FPKM 6.388462 7.312968 2.660361 3.122858 2.222219 1.685772 1.743596 2.213144 2.847739 2.368434