Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00691 ATGATGGAAGTGGTTTGGAGGAGGCAGCATCGGTGTGATATTTTGGTGGTGGTGGTGGTGGTATTTTCACGTATCAGTGGGAATAAGTATTGGAGAATAAGTTTGGATATGAGTTCAGATAGCAGGAGTCAAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCCCACTGGATCGTAAAATCCGGTCTGATCGTTTTTCATATCGTGATGCACCATACAGGAGAGAATCTCGTCGGGGTTTCAGTCGAGATAATCTTTGCAAGAACTGCAAGCGGCCTGGCCATTTTGCAAGAGAATGCCAAGATGTCGCAATTTGTCACAATTGTAGTCTCCCTGGGCATATTGCTTCCGAGTGCACGACAAAGTCGCTATGTTGGAACTGTCGAGAACCCGGTCACATGGCAAGTAGCTGCCCCAATGAAGGCATTTGCCACACCTGTGGTAAGGCAGGACATCGGGCCAGGGAATGCACGGCTCCTCCGCTCCCCACTGGCGACTTGAGGCTTTGCAATAATTGCTATAAGCAAGGTCATATAGCAGCTGATTGTACTAATGAGAAGGCGTGCAACAATTGCAGGAAGACAGGCCATCTTGCTCGTGAATGTCCAAATGACCCGATTTGCAACCTGTGTAATGTATCAGGGCATGTGGCCAGACAGTGTCCGAAGTCCAACGTCCTCGGAGACCGAGTAGACCGAGGCAGTGGCGGTGGCAGTGTGCGGGGTGGTGCTGGTGTTTACCGGGATGTTGTGTGTAGGACATGCCAGCAGCTTGGCCATATGAGTAGAGATTGCATGGGCCCTTTGATGATCTGCCATAACTGCGGGGGACGTGGTCACTTGGCATACGAATGCCCTTCTGGTCGGTTTATGGACCGTTATCCCCGGAGGTACTGA 903 51.5 MMEVVWRRQHRCDILVVVVVVFSRISGNKYWRISLDMSSDSRSQSRSRSRSRSRSRSPLDRKIRSDRFSYRDAPYRRESRRGFSRDNLCKNCKRPGHFARECQDVAICHNCSLPGHIASECTTKSLCWNCREPGHMASSCPNEGICHTCGKAGHRARECTAPPLPTGDLRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARECPNDPICNLCNVSGHVARQCPKSNVLGDRVDRGSGGGSVRGGAGVYRDVVCRTCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7144349 7147355 - CmaCh19G006910.1 Cma19g00691 315379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00691 300 Pfam Zinc knuckle 171 187 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 108 122 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 88 103 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 253 267 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 209 225 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 127 142 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 273 289 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 145 160 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Pfam Zinc knuckle 190 206 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 PANTHER OS10G0545300 PROTEIN 45 300 - -
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 254 267 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 MobiDBLite consensus disorder prediction 41 60 - -
Cma19g00691 300 Gene3D - 37 123 - -
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 210 225 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Gene3D - 189 239 - -
Cma19g00691 300 Gene3D - 145 188 - -
Cma19g00691 300 SUPERFAMILY Retrovirus zinc finger-like domains 74 103 IPR036875 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 88 104 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 209 225 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 253 269 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 171 187 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 273 289 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 190 206 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 SUPERFAMILY Retrovirus zinc finger-like domains 168 207 IPR036875 GO:0003676|GO:0008270
Cma19g00691 300 SUPERFAMILY Retrovirus zinc finger-like domains 247 291 IPR036875 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 172 187 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 108 121 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 Gene3D - 124 144 - -
Cma19g00691 300 Gene3D - 247 291 - -
Cma19g00691 300 PANTHER - 45 300 - -
Cma19g00691 300 MobiDBLite consensus disorder prediction 43 60 - -
Cma19g00691 300 SUPERFAMILY Retrovirus zinc finger-like domains 106 143 IPR036875 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 146 159 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 191 206 IPR001878 GO:0003676|GO:0008270
Cma19g00691 300 ProSiteProfiles Zinc finger CCHC-type profile. 274 289 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00691 K09250 CNBP; cellular nucleic acid-binding protein - csv:101213305 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00691 Cma-Chr19:7144349 Cma18g01248 Cma-Chr18:9739710 5.42E-10 dispersed
Cma11g01078 Cma-Chr11:5901391 Cma19g00691 Cma-Chr19:7144349 3.45E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00691 Cma_Chr19 FPKM 12.601498 14.78184 15.956051 17.312677 21.32774 26.368765 20.614965 28.523705 29.300484 28.801073