Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00692 ATGGGGACGGTTGCCGGAGAGGAGTTGATGAACTTGGAGAAAATGCAGGAAATAAATGCCCGTGAAGAGAAAATTCTTGTATTAGTAAGGTTGAGACCTTTGAATGAGAAGGAGATTATTATGAATGAAGCAGTGGATTGGGAGTGCATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTGGAGGTGATTGCTCCACAAAGCAGGTGTACGAGGAAGGAGCCAAAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCGAGTATTTTTGCATATGGTCAAACAAGCAGTGGAAAGACATACACCATGAACGGAATTCTTGAACATTCAGTGTCAGATATATTTGATTACATTAGAAAGCTCTATTCTGAGTTCTCTGACTTTTTTGGTTATCAACAGCGAGGGACTGTTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAAGGAGCTCATTTCAATGTGTGAAGCTCAACGACGGATTGGAGAGACCTCGCTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAATTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACCACCCTTGCTGCTAGTGTGAATTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGGCGAGATTGAAAGAAGGCTGCCACATAAATCGCAGTTTACTGACTCTCGGTACTGTTATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACGCGAATATTGCAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCGTCATCTGTACATTGAGCCCTGCAAGAACTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACTACAAAAGCACAAGTCAACGTGGTCATGTCTCAGAAGGCTTTGGTTAAGCATTTGCAGAAAGAGGTAGCCAGATTGGAGAGTGAGTTGAGAACCCCTGCCCCTATTTCATCCAGTTCTGAATATGCAGCCTTACTTAAAAAGAAAGATCTACAAATTGAGAAGATGGCGAAGGAGATTAGAGAGCTCACAAAGCAAAGAGATCTCGCTCAATCCCGGATTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCGTGAGAAAGGATATCGAAAGTAGTTATTCCAAATTGCAAGCGAGGGATGCTTTAGAGGATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGATAGAGATATGGGTGTAAAATCCTTCAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTTCTTGACTCTTACTCCGGTCACAGTCCAATGACATCAACCGCTCTTGCAATAGTCGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAATCAGGGATGATAACTTGTCACCGCTTGCTGCCAATAACGGTGAATTTAGAGGAAATGGTCATGAAATGATATCAACCCCTGTGAAAGGGAATAGAGAAGCACATCAAATTCAAAATAATTCAGCAAATGATCAACCGGAGCAAAGACTCCATAATGTAAGAAGGACAGAAATTAATTCTATGTTCAGTCCTTACCGCGACCATGCATGTTCAAAGGTTACTGCTGATATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATCTCTCGACTGATTTATCACCTGGTAGAGGAGAAACCACCCCTCCTCATGGATTTGACCAAAGATTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCTCACAATTAGTCTTTGATGACAGCCTCCGGAGGCTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCGGCAGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCCGGATTGAAGAAAATGACCAACTTAGAGTATGGGAAAGAACTTGCTGATGGACAGTTTCTGAAGGATGGCCACGAATTGGATCTCTTAAAGGCTTCAAATGGTGCTGGAGGGGGAGAGACATTGCAAGATGCTGCACTAGTCACATCCGATTGGAACCAAGAATTTCAGAGGCTGCGGAGGATGATAGTTGAACTTTGGCAAACTTGCAACGTCTCGATAGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGTGATCCTACCGATTCCATTTACATGGAAGTGGAGATTAGGAGACTGACTTTTATGAAGCAATCATTTTATTACGGCAATGAAGCTATGGAAGATGGCCGGAAAGTTTCTTTTGCTTCAAGTGTGAGAGATCTTCGTCGCGAGAGAGAAACATTGAGTAAGTTAATGCGGAAACGATTCTCAGAAGAAGAGAGAAAGAGACTCTTCCAGCAATGGGGAATCTTGTTGAGTTCAAAACGCCGAAGGCTGCAGCTCATCAACTGCTTGTGGAGCGACTCGAAGAACATGAACCATGTAACAGAGAGTGCAGCCATTGTTGCGAAGCTTGTGAAGTTTGCTGAACAAGGACAGGTTCTCAAGGGGAACTTTGGTCTCAGCTTCATCACACCTCCACTGAAAAGTAGAAGAACATATAGCTGGAAGAACAGTAGGAGTTCTCTTCCGTGA 2703 42.69 MGTVAGEELMNLEKMQEINAREEKILVLVRLRPLNEKEIIMNEAVDWECINDTSILYRNTLREGSTFPSAYTFDRVFGGDCSTKQVYEEGAKEIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEHSVSDIFDYIRKLYSEFSDFFGYQQRGTVVEKVTEETLRDWNHLKELISMCEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVNFIDLAGSERAAQALSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAVICTLSPARTHVEQTRNTLLFACCAKEVTTKAQVNVVMSQKALVKHLQKEVARLESELRTPAPISSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRIEDLLRMVGHDDVVRKDIESSYSKLQARDALEDEGSPSETSSVADFRDRDMGVKSFNNPHYYDGDSDDGKRFLDSYSGHSPMTSTALAIVEDSDDCKEVQCIEMGESIRDDNLSPLAANNGEFRGNGHEMISTPVKGNREAHQIQNNSANDQPEQRLHNVRRTEINSMFSPYRDHACSKVTADMSSSRSLKLARSWSCRANLSTDLSPGRGETTPPHGFDQRFPGRPEGFERKLSQLVFDDSLRRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMTNLEYGKELADGQFLKDGHELDLLKASNGAGGGETLQDAALVTSDWNQEFQRLRRMIVELWQTCNVSIVHRTYFFLLFQGDPTDSIYMEVEIRRLTFMKQSFYYGNEAMEDGRKVSFASSVRDLRRERETLSKLMRKRFSEEERKRLFQQWGILLSSKRRRLQLINCLWSDSKNMNHVTESAAIVAKLVKFAEQGQVLKGNFGLSFITPPLKSRRTYSWKNSRSSLP 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7154378 7160435 + CmaCh19G006920.1 Cma19g00692 315380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00692 900 Gene3D Kinesin motor domain 20 145 IPR036961 -
Cma19g00692 900 Gene3D Kinesin motor domain 146 352 IPR036961 -
Cma19g00692 900 Coils Coil 330 350 - -
Cma19g00692 900 MobiDBLite consensus disorder prediction 420 445 - -
Cma19g00692 900 SMART kinesin_4 22 329 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 Pfam Domain of unknown function (DUF3490) 722 881 IPR021881 -
Cma19g00692 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 353 IPR027417 -
Cma19g00692 900 Coils Coil 367 401 - -
Cma19g00692 900 PANTHER CENTROMERE PROTEIN E 6 899 - -
Cma19g00692 900 MobiDBLite consensus disorder prediction 599 621 - -
Cma19g00692 900 ProSiteProfiles Kinesin motor domain profile. 24 321 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 PANTHER KINESIN-LIKE PROTEIN KIN-7F 6 899 - -
Cma19g00692 900 PRINTS Kinesin heavy chain signature 271 292 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 PRINTS Kinesin heavy chain signature 185 202 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 PRINTS Kinesin heavy chain signature 221 239 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 Pfam Kinesin motor domain 30 138 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 Pfam Kinesin motor domain 149 321 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma19g00692 900 ProSitePatterns Kinesin motor domain signature. 220 231 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00692 K11498 CENPE; centromeric protein E - csv:101213783 1476.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00605 Cma-Chr16:3116190 Cma19g00692 Cma-Chr19:7154378 0 dispersed
Cma18g00049 Cma-Chr18:199485 Cma19g00692 Cma-Chr19:7154378 0 dispersed
Cma19g00677 Cma-Chr19:7048328 Cma19g00692 Cma-Chr19:7154378 5.83E-164 transposed
Cma11g01073 Cma-Chr11:5881830 Cma19g00692 Cma-Chr19:7154378 0 wgd
Cma12g00427 Cma-Chr12:2217066 Cma19g00692 Cma-Chr19:7154378 0 wgd
Cma19g00692 Cma-Chr19:7154378 Cma05g00285 Cma-Chr5:1216591 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00692 Cma_Chr19 FPKM 3.09575 3.779484 0.53396 0.918616 17.177235 16.941315 18.770977 0.140417 0.110122 0.130052