Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00697 ATGGAGATCCCTGGCGCCATTTCCTTCTCATGGAGTCGTACTGTCTCCCATTCTATTCGCATCCCTCAACATGTGGCAATATGTGGCAAGAGGTTCAGGGTTTTCTGCGCCATTGATTCAACAGAGATGGTTGACGTTGGGGGGCTCGGCATAGTTAATTTGAAACTTCCTAGTGAGGCTTTGCTGGCTAAAATAGTTCTGGCATTTCCCATTGGAGTCGAAGATAGGGAACCATTTGACGTGTCTTCTCTTCTTTCTTCATTGGGAAACGTCCATCTTCATTCGGGTAGTAGGAATATTATTTTTTGGTCCCCTAATCCCTCCAAGGGGCTCCCTTGCTGTTCATTTTTCCTCATTTTGAGTAGCCCTCGCGCTTCTAGGAACTCGAGGAAGGTTCACCTTCTCAAGAAGATCGAATTCTTTACCTGGCAAGCCTTACATGGGAGAGTGAACACAATGGGTTGCATTCAAAAACACTCTTCCTTCTTGTTGGGGCCGCAGTGGTGCTTTCATAGTAGCAAGGCGTCTGAAAATCTGGATCACATCATGCGGAAATCCCAGTTCGCACTTCCATCATGGGACTGTTTTTTGGAGACTTTTGGTGTTCACTTAGCTCGTTATAGAGATCGTTCTCTCATGTTGGGGGAGAAAAATCAGTTCACTGTATCAATAACTGGAGCTACAGGCTTTATCGGTCGAAGACTTGTGCAAAGGCTACATACAGATAACCATAACATTCGAGTTTTGACACGCTCTAAATCTAAAGCCGAGTTGATTTTTCCGGCTAGGGAGTTTCCAGGAATTGTGATCGCAGAGGAGCCAGGGTGGAAAGACTGCATCCAAGGTTCAGATGGCGTTGTTAACTTGGCTGGGTTGCCTATAAGTACCAGGTGGTCTCCTGAGATCAAGAAAGAGATCAAGCAAAGCAGGATCAGAGTCACCTCAAAGGTTGTGAGCTTAATTAATGATGCCCCCGACGTAGCTCGCCCGACAGTTTTGGTTAGCGCAACAGCTATTGGTTACTATGGCACTAGTGAAACAGCAATATTTGACGAACGAAGTCCATCCGGAAATGACTACTTGGCCGAGGTTTGTAGGGAATGGGAAGCAACAGCCCTGGGAGCAAACAAGAACGTCAGAGTGGCTCTTATTCGTATAGGTGTTGTTCTTGGTAAAGAAGGTGGTGCTTTAGGAGTTATAAATGGAACGGCGCCGAACCCGGTTAAGTNNNNNNNNNNGATTGGGAGCTGCGATGGGCAGACCTTCATGGCTTCCTGTACCTGA 1284 46.34 MEIPGAISFSWSRTVSHSIRIPQHVAICGKRFRVFCAIDSTEMVDVGGLGIVNLKLPSEALLAKIVLAFPIGVEDREPFDVSSLLSSLGNVHLHSGSRNIIFWSPNPSKGLPCCSFFLILSSPRASRNSRKVHLLKKIEFFTWQALHGRVNTMGCIQKHSSFLLGPQWCFHSSKASENLDHIMRKSQFALPSWDCFLETFGVHLARYRDRSLMLGEKNQFTVSITGATGFIGRRLVQRLHTDNHNIRVLTRSKSKAELIFPAREFPGIVIAEEPGWKDCIQGSDGVVNLAGLPISTRWSPEIKKEIKQSRIRVTSKVVSLINDAPDVARPTVLVSATAIGYYGTSETAIFDERSPSGNDYLAEVCREWEATALGANKNVRVALIRIGVVLGKEGGALGVINGTAPNPVKXXXXIGSCDGQTFMASCT 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7165039 7170635 + CmaCh19G006970.1 Cma19g00697 315385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00697 427 PANTHER SUGAR NUCLEOTIDE EPIMERASE RELATED 218 398 - -
Cma19g00697 427 PANTHER EPIMERASE FAMILY PROTEIN SDR39U1 218 398 - -
Cma19g00697 427 Gene3D - 216 422 - -
Cma19g00697 427 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 219 399 IPR036291 -
Cma19g00697 427 Pfam NAD dependent epimerase/dehydratase family 223 393 IPR001509 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00697 K07071 K07071; uncharacterized protein - csv:101214028 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00678 Cma-Chr19:7059665 Cma19g00697 Cma-Chr19:7165039 6.23E-122 dispersed
Cma19g00697 Cma-Chr19:7165039 Cma18g01024 Cma-Chr18:8545289 9.19E-07 dispersed
Cma11g01071 Cma-Chr11:5872038 Cma19g00697 Cma-Chr19:7165039 4.96E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g49 . . Bda06g00973 . . . . . Cmo19g00706 . . . . . Sed04g3899 Cpe04g00098 Cpe15g00565 Bhi05g01785 Tan02g0750 Cmetu05g1372 . Hepe02g0466 . . Cla02g00482 Cam02g0490 Cec02g0491 Cco02g0496 Clacu02g0493 Cmu02g0489 Cre02g0822 . . Cone3ag1205 . . Csa07g00041 . Cme01g01336 . . . . . . . . . . . . Cma19g00697 . Car19g00539 . . . . . . . . . . . . . . . . Lsi11g01141 . Chy01g00740 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007123 1 2 1 1 1 1 2 1 1 1 1 1 3 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00697 Cma_Chr19 FPKM 0.782488 0.0 2.585288 2.639755 6.975234 7.478187 6.886674 1.081071 1.00098 0.680366