Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00699 ATGGCGATAACTCTCAACAATGGCTTCCAGATGCCGGTGATGGGGCTGGGAGTTTGGCGCATGGAGAAGCACCTAGTCAGAGATCTGATTATCAACGCTATTAAGATTGGTTATCGCCATTTCGACTGCGCCGCTGATTACAAAAATGAAGCTGAAGTTGGCGAGGCTCTAGCAGAAGCTTTTAAGAGCGGACTTGTCAAGAGGGAAGAACTCTTCATCACCACAAAGCTCTGGAATTCAGACCATGGACATGTTCTTGGGGCTTGCAATGACAGCTTAAAGAAGCTTCAACTAGACTACTTGGATCTGTACCTGGTGCACTTCCCGGTTGCCGTAAAGCATACCGGAGTCGGCAATACTAGCAGTGAATTGGCTGAAGATGGGGTTTTGGACATTGATACGACCATATCCTTAGAGACTACTTGGCATGCCATGGAAGATCTTGTTTCCAATGGCTTAGTTCGTAGCATTGGCATCAGCAATTACGACATCTTTTTAACCAGAGACTGTTTAGCGTATTCGAAAGTGAAGCCTGCTGTGAACCAAATTGAAACACATCCTTATTTTCAACGAGAATCTCTTGTCAAATTTTGCCAGAAACATGGGATTTGTGTCACGGCTCATACTCCTCTAGGGGGTGCTGCTGCTAACCATGAATGGTTTGGTACAGTTTCTTGTCTGGAAGATCCAGTTCTTCAAGGTCTCGCCAAGAAACATGGGAAGACTGCTGCTCAAATTGCCCTCAGGTGGGGAATCCAAAGGAACACCGTCGTGATTCCGAAGACGTCAAAACCTGAGAGATTGAAAGAGAATTTCCAGGTATTTGATTTTGAGCTTGCAATAGAGGACATGGATCTAATCAATGGAATCGATAGGAAATATCGAACGAACCAACCCGCAAAGTTCTGGGGCATCGATTTATATGCTTAG 930 45.16 MAITLNNGFQMPVMGLGVWRMEKHLVRDLIINAIKIGYRHFDCAADYKNEAEVGEALAEAFKSGLVKREELFITTKLWNSDHGHVLGACNDSLKKLQLDYLDLYLVHFPVAVKHTGVGNTSSELAEDGVLDIDTTISLETTWHAMEDLVSNGLVRSIGISNYDIFLTRDCLAYSKVKPAVNQIETHPYFQRESLVKFCQKHGICVTAHTPLGGAAANHEWFGTVSCLEDPVLQGLAKKHGKTAAQIALRWGIQRNTVVIPKTSKPERLKENFQVFDFELAIEDMDLINGIDRKYRTNQPAKFWGIDLYA 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7178458 7181843 + CmaCh19G006990.1 Cma19g00699 315387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00699 309 PIRSF AKR 1 308 IPR020471 GO:0016491
Cma19g00699 309 PRINTS Aldo-keto reductase signature 33 57 IPR020471 GO:0016491
Cma19g00699 309 PRINTS Aldo-keto reductase signature 91 109 IPR020471 GO:0016491
Cma19g00699 309 PRINTS Aldo-keto reductase signature 145 162 IPR020471 GO:0016491
Cma19g00699 309 PRINTS Aldo-keto reductase signature 179 208 IPR020471 GO:0016491
Cma19g00699 309 PRINTS Aldo-keto reductase signature 226 250 IPR020471 GO:0016491
Cma19g00699 309 Pfam Aldo/keto reductase family 15 290 IPR023210 -
Cma19g00699 309 ProSitePatterns Aldo/keto reductase family signature 1. 37 54 IPR018170 GO:0016491
Cma19g00699 309 PANTHER NAD(P)-LINKED OXIDOREDUCTASE SUPERFAMILY PROTEIN 3 305 - -
Cma19g00699 309 CDD AKR_AKR2A1-2 1 308 IPR044485 GO:0047641
Cma19g00699 309 Gene3D - 1 306 IPR036812 -
Cma19g00699 309 PANTHER ALDO/KETO REDUCTASE 3 305 - -
Cma19g00699 309 ProSitePatterns Aldo/keto reductase family signature 2. 145 162 IPR018170 GO:0016491
Cma19g00699 309 ProSitePatterns Aldo/keto reductase family putative active site signature. 259 274 IPR018170 GO:0016491
Cma19g00699 309 SUPERFAMILY NAD(P)-linked oxidoreductase 3 299 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00699 - - - csv:101214993 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00200 Cma-Chr16:897890 Cma19g00699 Cma-Chr19:7178458 7.11E-57 dispersed
Cma19g00680 Cma-Chr19:7071726 Cma19g00699 Cma-Chr19:7178458 4.76E-115 dispersed
Cma19g00699 Cma-Chr19:7178458 Cma14g01460 Cma-Chr14:11109916 2.74E-12 dispersed
Cma19g00699 Cma-Chr19:7178458 Cma07g01013 Cma-Chr7:5243336 1.87E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g53 . . . . . . . . Cmo19g00708 . . . . . Sed05g2284 . Cpe15g00567 Bhi05g01781 Tan02g0747 Cmetu01g1228 . Hepe02g0463 . . Cla02g00479 Cam02g0487 Cec02g0488 Cco02g0493 Clacu02g0490 Cmu02g0485 Cre02g0819 Cone12ag1195 Cone8ag1243 . . . Csa07g00045 . Cme01g01322 . . . . . . . . . . . . Cma19g00699 . Car19g00541 . . . . . . . . . . . . . . . . Lsi11g01144 . Chy01g00736 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002236 1 2 1 1 0 3 1 2 2 2 3 4 1 2 4 1 3 3 1 2 4 2 2 2 3 3 1 3 1 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00699 Cma_Chr19 FPKM 19.442047 18.702801 40.985123 42.674217 33.664761 31.510874 34.4478 60.525517 54.651066 59.993073