Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00701 ATGGATGATGGCCGGCATCATGAAAATGGGAGGCACAAGTTAGACTACTTCAGAGGGAGCCCCTCGCCGTGGCATATGGCGCCCCCTCATCATGTAAAGGAACCGAACGCCTTGGTCATGAATAAGAAGATCATGTCTATTATAGCCGAGAGAGATGCTGCTATTCGGGAGCGAAATTTAGCACTATCTGAGAAGAAAGGTGCATTGGCTGCACGCGACGAGGCTCTCCAACAGCGTGATGAGGCGATTGCACAGCGTGATTCGGCATTAATGGAACGGGACAATGCCCTTGCAGCGCTTGAAATTCGTGACAACGCTTCAAACTTTCCTCTTGGCAATGGGATCCAACGCAAAACGAAGCGATTGCACCATTTATCTAATCATATGCCAAGCATCATGTCTGAAACTCCCTATGGTACAAAAGACGTGCATATAACTGATGCCTTTCCAATTACAGTTATAGCTTCTGAAGCTGTTAAGTCTCGACAGGGAAACCGAACAACAACGGATAACAAGGCAGTTTCATCAAAGACATCGAAGCTGCCGAGGAAGAAAGTTGGCGAAGATTTGAATAGACAGGCTGCTACCGATGGCACGAAATACAGAACGGACTGGGATGGTCAGGATGTTGGTTTGAACCTGGTTAGTTTCGATGACTCTTCTATGCCAGCACCAATTTGCTCGTGTACTGGACTTGCAAGGCAGTGCTACAAATGGGGGAATGGAGGTTGGCAATCATCGTGTTGTACCACCCATATGTCCATGTATCCGCTCCCACATATGCCGAATAAACGCCATGTCCGAATGGGTGGGCGGAAAATGAGTGGAAGTGTTTTCACAAAGCTGCTTAGTCGTCTAGCTGCAGCAGGTCACGATCTCTCGGTACCGGTGGATCTTAAGGACCACTGGGCACGACACGGTACAAATCGCTACATAACAATCAGGTAG 948 48.31 MDDGRHHENGRHKLDYFRGSPSPWHMAPPHHVKEPNALVMNKKIMSIIAERDAAIRERNLALSEKKGALAARDEALQQRDEAIAQRDSALMERDNALAALEIRDNASNFPLGNGIQRKTKRLHHLSNHMPSIMSETPYGTKDVHITDAFPITVIASEAVKSRQGNRTTTDNKAVSSKTSKLPRKKVGEDLNRQAATDGTKYRTDWDGQDVGLNLVSFDDSSMPAPICSCTGLARQCYKWGNGGWQSSCCTTHMSMYPLPHMPNKRHVRMGGRKMSGSVFTKLLSRLAAAGHDLSVPVDLKDHWARHGTNRYITIR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7189965 7191589 + CmaCh19G007010.1 Cma19g00701 315389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00701 315 MobiDBLite consensus disorder prediction 161 185 - -
Cma19g00701 315 Pfam GAGA binding protein-like family 1 315 IPR010409 -
Cma19g00701 315 PANTHER - 1 315 IPR010409 -
Cma19g00701 315 Coils Coil 72 92 - -
Cma19g00701 315 SMART GAGA_bind_2 1 315 IPR010409 -
Cma19g00701 315 MobiDBLite consensus disorder prediction 161 176 - -
Cma19g00701 315 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00701 - - - cmax:111468386 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00293 Cma-Chr5:1258878 Cma19g00701 Cma-Chr19:7189965 3.22E-122 dispersed
Cma11g01067 Cma-Chr11:5855865 Cma19g00701 Cma-Chr19:7189965 0 dispersed
Cma12g00420 Cma-Chr12:2178482 Cma19g00701 Cma-Chr19:7189965 1.71E-120 dispersed
Cma15g00879 Cma-Chr15:4463790 Cma19g00701 Cma-Chr19:7189965 1.54E-41 dispersed
Cma15g00880 Cma-Chr15:4464667 Cma19g00701 Cma-Chr19:7189965 1.10E-40 dispersed
Cma19g00700 Cma-Chr19:7183906 Cma19g00701 Cma-Chr19:7189965 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00880 CST 1 281 BBR/BPC Transcription factor family AT2G01930 54.7 8.6e-81 297.7
Cma04g02151 CST 337 616 BBR/BPC Transcription factor family AT2G01930 53.4 5.2e-78 288.5
Cma15g00879 . 1 278 BBR/BPC Transcription factor family AT2G01930 54.7 3.2e-75 279.3
Cma15g00880 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 8.2e-42 167.9
Cma15g00879 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cma04g02151 CST 162 281 BBR/BPC Transcription factor family AT2G35550 59.2 3.1e-41 166.0
Cma12g00420 . 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cma11g01067 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cma19g00701 . 209 315 BBR/BPC Transcription factor family AT2G35550 57.9 1.0e-36 151.0
Cma05g00293 . 230 339 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-36 150.6
Cma12g00420 . 239 345 BBR/BPC Transcription factor family AT1G68120 57.9 2.5e-37 153.3
Cma11g01067 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.3e-82 303.9
Cma19g00701 . 1 315 BBR/BPC Transcription factor family AT2G21240 61.4 4.8e-82 302.0
Cma19g00700 . 1 305 BBR/BPC Transcription factor family AT2G21240 60.8 3.9e-76 282.3
Cma05g00293 . 18 339 BBR/BPC Transcription factor family AT2G21240 51.5 1.9e-62 236.9
Cma11g01067 . 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.7e-71 265.4
Cma19g00701 . 1 315 BBR/BPC Transcription factor family AT4G38910 58.1 1.6e-66 250.4
Cma19g00700 . 1 305 BBR/BPC Transcription factor family AT4G38910 57.7 1.5e-61 233.8
Cma05g00293 . 18 339 BBR/BPC Transcription factor family AT4G38910 50.6 4.3e-56 215.7
Cma12g00420 . 91 345 BBR/BPC Transcription factor family AT5G42520 63.2 1.2e-82 303.9
Cma05g00293 . 108 339 BBR/BPC Transcription factor family AT5G42520 58.2 1.3e-76 283.9
Cma15g00880 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 8.2e-42 167.9
Cma15g00879 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cma04g02151 CST 162 281 BBR/BPC Transcription factor family AT2G35550 59.2 3.1e-41 166.0
Cma12g00420 . 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cma11g01067 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cma19g00701 . 209 315 BBR/BPC Transcription factor family AT2G35550 57.9 1.0e-36 151.0
Cma05g00293 . 230 339 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36907 PF06217 GAGA_bind 4.90E-100 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00701 Cma_Chr19 FPKM 0.923875 1.080807 2.111674 2.283511 3.092191 3.895268 3.063422 3.215886 2.858697 2.809037