Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00702 ATGAAAATCGGTGTACCAGGAGGAGTCGTCATCGTTATTGTGAGTGTTAAGAGAGAGAAATCGCCGGCGTTATCTCGGGATTCCCGCCGGGAAATTAGTTTAAAGCTCACGCGCTGGTTTTTGACCGGAAATGCTTCATCTTCTAGAAATGTTGTGGCATTTGGACTGAAGCCTAGCTGTTCGTTTGAACGTCGTTGGCTTTCGTGGACGCCATTGTTGAGTTTCTTGCTGCTGGTTCAGTTCGTGAAGTTTTCTTTGTTTAATGTATGGCAGATTGAATGGTTGATTAGTTACGTAAGTGTTTGGGGCGAAATGGGTGATACTGAAGATGTTCATACTGATAGCTTTCGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCCTCTTCTGTGAAGCATAATTTCTCTATGGATCAGCTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAATCGAAGAATTGGGATACCACCGCAGATCCCACCAATCTCTCCGTATTCTCAGATCCCGGTGTCGCGTCCGATGAACCAGCACAGTTATAGCTCTGTTCCTACTCATTCACGATCGTTATCTCAGCCTTCTTTCTTCTCTTTCGATTCTTTGCCGCCTTTAAGCCCCTCTCCATTTCGGGACTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGACAGGGATGCTAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCGCAGATGGGAGATGCTTTACCCCCTCGTAAAGCACATAGGCGGTCCAATAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTATCCCTTTAAGTGGCTCAGGTAGATTGGAGCGATCAACAAATAGTAAAGAGAATGTGGGCATATTTAAGCCGGGTAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAGGCATTGATAACAATTTGGAAGGAATGGGTGAAAGGAAGCCCGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCTGGGGCCAACGACAAGAATGGTCATGAGAAACGGGAGGATTTGGATAGTAGAGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAGCGCTCAAATGCCTGGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGCGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCCACACCACCTGGTGTTCGTCCGGGGCATCTTTCTTCAAACAACTTAGTTGATGGTAATTCATCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCCGAACTGAAGAAAATTATGGCGAACGACAAACTTGCTGAGATTGCACTATCCGATCCCAAGCGTGCTAAGAGGATCTTGGCCAACCGTCAATCTGCTGCTCGATCGAAAGAACGTAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTACAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTACAGCGAGACTCAGTTGGACTTACAAATCAGAATAATGAGCTGAAGTTTCGTCTCCAAGCCATGGAACAGCAAGCACAATTACGGGATGCTCTAAATGAAGCGTTAACTGGGGAGGTTCAGCGATTGAAGCTCGCTACAACCGATATAAACGCGCAATCTCATCCCTCAAACGGGGTAATGTCTCAATCATCTATGAATCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCACCAACAGCATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1995 45.06 MKIGVPGGVVIVIVSVKREKSPALSRDSRREISLKLTRWFLTGNASSSRNVVAFGLKPSCSFERRWLSWTPLLSFLLLVQFVKFSLFNVWQIEWLISYVSVWGEMGDTEDVHTDSFRNLQCSFGTSSSSSVKHNFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRIGIPPQIPPISPYSQIPVSRPMNQHSYSSVPTHSRSLSQPSFFSFDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSSQMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLIPLSGSGRLERSTNSKENVGIFKPGSQFVKREPSLEKGIDNNLEGMGERKPEGDTVDDLFSAYMNLDNIDLFNSSGANDKNGHEKREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGHLSSNNLVDGNSSPFSLEFGNGEFSGAELKKIMANDKLAEIALSDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTGEVQRLKLATTDINAQSHPSNGVMSQSSMNHHGLQLQLQQQHQQHMQQNGSATTKPESNQ 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7197762 7201145 + CmaCh19G007020.1 Cma19g00702 315390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00702 664 MobiDBLite consensus disorder prediction 280 315 - -
Cma19g00702 664 Coils Coil 537 592 - -
Cma19g00702 664 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 175 655 - -
Cma19g00702 664 MobiDBLite consensus disorder prediction 616 664 - -
Cma19g00702 664 CDD bZIP_plant_RF2 522 571 IPR044759 GO:0003700|GO:0006355
Cma19g00702 664 MobiDBLite consensus disorder prediction 388 419 - -
Cma19g00702 664 MobiDBLite consensus disorder prediction 166 199 - -
Cma19g00702 664 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 175 655 - -
Cma19g00702 664 Gene3D - 520 572 - -
Cma19g00702 664 SMART brlzneu 517 581 IPR004827 GO:0003700|GO:0006355
Cma19g00702 664 SUPERFAMILY Leucine zipper domain 521 572 IPR046347 GO:0003700|GO:0006355
Cma19g00702 664 MobiDBLite consensus disorder prediction 373 387 - -
Cma19g00702 664 MobiDBLite consensus disorder prediction 214 315 - -
Cma19g00702 664 MobiDBLite consensus disorder prediction 455 483 - -
Cma19g00702 664 MobiDBLite consensus disorder prediction 367 442 - -
Cma19g00702 664 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 519 582 IPR004827 GO:0003700|GO:0006355
Cma19g00702 664 MobiDBLite consensus disorder prediction 182 199 - -
Cma19g00702 664 Pfam bZIP transcription factor 521 575 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01066 Cma-Chr11:5844972 Cma19g00702 Cma-Chr19:7197762 0 dispersed
Cma19g00702 Cma-Chr19:7197762 Cma06g01616 Cma-Chr6:10049991 7.67E-51 dispersed
Cma19g00702 Cma-Chr19:7197762 Cma19g00704 Cma-Chr19:7204892 0 proximal
Cma11g01065 Cma-Chr11:5839114 Cma19g00702 Cma-Chr19:7197762 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36908 PF00170 bZIP_1 1.20E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00702 - - cpep:111776417 1010.36