Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00704 ATGGGAGATACTGACGATGCTAATGCTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGCATCTTCTTCTTTTGCTGGAAATCTTCCTTTGTCGATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAATTCGTCCACCACACTTTCAGTCAAATTTTCTTAGTGATAATAGTAGAAGAATTGGGATTCCTCCTAGCCCCAACTCACCGCAGATCCCACCGATTTCGCCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAAAATTATAGCCCAGTGCCTACTCATTCCCGATCGTTATCTCAGCCTTCTTTCTTTTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGCGAGTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCCCATTCTTTGTTGCCTCCCTCACCTTATATGAGAGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCTCCCATTCAGTAGCTCTGGTGGATTGGAGCGATCTACGAGTAGTAAAGAGAATGCTGGCATGTTAAAGCCCGCCAGTCAGTTAGTTAAAAGAGAACATAGTTTGGAGAAAAACGTTGACAACAATTTAGAAGGAACGGGTGAGAGGAAATCCGATGGGGACAATGTGGACGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCTGGGACGAACGACAAGAACGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACGAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAGAGTGGGGATAGCGCTCAAATGCCTCGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGAGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGACGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCAGGGCAACTTTCATCAAACAACTTAGTTGACGGTAATTCAGCTTCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATCATGGCAAACGACAAACTTGCCGAGATTGCTTTGACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACTCTTTTACAGAGAGATTCAGTAGGGCTTACAAACCAGAATAATGAACTGAAGTTCCGTCTTCAAGCCATGGAACAACAAGCACAATTACGGGATGCTCTTAACGAAACCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACGATGGAGCTAAATGCGCAGTCTCATCCCTCAAACGGAGTAATGCCCCAATCTTCCATCAGTCACCACAGCCTCCAGCTTCAGCTTCAGCACCACCAACAACAGCAACAAATGCAGCAGAATGGGAGTGCACCCACAAAACCTGAATCCAACCAATAA 1695 44.96 MGDTDDANAENMRNLQCSYGASSSFAGNLPLSMDQLKISQMNCSQIRPPHFQSNFLSDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYSPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPSTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSLPFSSSGGLERSTSSKENAGMLKPASQLVKREHSLEKNVDNNLEGTGERKSDGDNVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPRLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSASFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNETLTAEVQRLKLATMELNAQSHPSNGVMPQSSISHHSLQLQLQHHQQQQQMQQNGSAPTKPESNQ 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7204892 7208271 + CmaCh19G007040.1 Cma19g00704 315392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00704 564 Coils Coil 436 491 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 520 564 - -
Cma19g00704 564 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 564 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 181 214 - -
Cma19g00704 564 SUPERFAMILY Leucine zipper domain 420 471 IPR046347 GO:0003700|GO:0006355
Cma19g00704 564 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 418 481 IPR004827 GO:0003700|GO:0006355
Cma19g00704 564 MobiDBLite consensus disorder prediction 354 380 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 68 82 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 266 341 - -
Cma19g00704 564 SMART brlzneu 416 480 IPR004827 GO:0003700|GO:0006355
Cma19g00704 564 MobiDBLite consensus disorder prediction 49 249 - -
Cma19g00704 564 Gene3D - 419 471 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 49 67 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 287 318 - -
Cma19g00704 564 MobiDBLite consensus disorder prediction 83 115 - -
Cma19g00704 564 Pfam bZIP transcription factor 420 474 IPR004827 GO:0003700|GO:0006355
Cma19g00704 564 MobiDBLite consensus disorder prediction 222 249 - -
Cma19g00704 564 Coils Coil 499 519 - -
Cma19g00704 564 CDD bZIP_plant_RF2 421 470 IPR044759 GO:0003700|GO:0006355
Cma19g00704 564 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01065 Cma-Chr11:5839114 Cma19g00704 Cma-Chr19:7204892 0 dispersed
Cma19g00704 Cma-Chr19:7204892 Cma20g00307 Cma-Chr20:1509757 8.23E-52 dispersed
Cma19g00702 Cma-Chr19:7197762 Cma19g00704 Cma-Chr19:7204892 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36909 PF00170 bZIP_1 9.20E-09 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00704 - - cpep:111776417 965.296