Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00704 | ATGGGAGATACTGACGATGCTAATGCTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGCATCTTCTTCTTTTGCTGGAAATCTTCCTTTGTCGATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAATTCGTCCACCACACTTTCAGTCAAATTTTCTTAGTGATAATAGTAGAAGAATTGGGATTCCTCCTAGCCCCAACTCACCGCAGATCCCACCGATTTCGCCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAAAATTATAGCCCAGTGCCTACTCATTCCCGATCGTTATCTCAGCCTTCTTTCTTTTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGCGAGTCCCCATCTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCCCATTCTTTGTTGCCTCCCTCACCTTATATGAGAGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCTCCCATTCAGTAGCTCTGGTGGATTGGAGCGATCTACGAGTAGTAAAGAGAATGCTGGCATGTTAAAGCCCGCCAGTCAGTTAGTTAAAAGAGAACATAGTTTGGAGAAAAACGTTGACAACAATTTAGAAGGAACGGGTGAGAGGAAATCCGATGGGGACAATGTGGACGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCTGGGACGAACGACAAGAACGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACGAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAGAGTGGGGATAGCGCTCAAATGCCTCGATTGAATTCCTCTGCTGAAAAGAGGGAAGGGATCAAACGAACTGCAGGGGGAGATATTGCTCCAACGACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGGAAGCTGCAGTTTGGTGACGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCAGGGCAACTTTCATCAAACAACTTAGTTGACGGTAATTCAGCTTCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATCATGGCAAACGACAAACTTGCCGAGATTGCTTTGACCGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACTCTTTTACAGAGAGATTCAGTAGGGCTTACAAACCAGAATAATGAACTGAAGTTCCGTCTTCAAGCCATGGAACAACAAGCACAATTACGGGATGCTCTTAACGAAACCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACGATGGAGCTAAATGCGCAGTCTCATCCCTCAAACGGAGTAATGCCCCAATCTTCCATCAGTCACCACAGCCTCCAGCTTCAGCTTCAGCACCACCAACAACAGCAACAAATGCAGCAGAATGGGAGTGCACCCACAAAACCTGAATCCAACCAATAA | 1695 | 44.96 | MGDTDDANAENMRNLQCSYGASSSFAGNLPLSMDQLKISQMNCSQIRPPHFQSNFLSDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYSPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPSTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSLPFSSSGGLERSTSSKENAGMLKPASQLVKREHSLEKNVDNNLEGTGERKSDGDNVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPRLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSASFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNETLTAEVQRLKLATMELNAQSHPSNGVMPQSSISHHSLQLQLQHHQQQQQMQQNGSAPTKPESNQ | 564 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7204892 | 7208271 | + | CmaCh19G007040.1 | Cma19g00704 | 315392 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00704 | 564 | Coils | Coil | 436 | 491 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 520 | 564 | - | - | |
Cma19g00704 | 564 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 76 | 564 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 181 | 214 | - | - | |
Cma19g00704 | 564 | SUPERFAMILY | Leucine zipper domain | 420 | 471 | IPR046347 | GO:0003700|GO:0006355 | |
Cma19g00704 | 564 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 418 | 481 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 354 | 380 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 266 | 341 | - | - | |
Cma19g00704 | 564 | SMART | brlzneu | 416 | 480 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 49 | 249 | - | - | |
Cma19g00704 | 564 | Gene3D | - | 419 | 471 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 49 | 67 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 287 | 318 | - | - | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 83 | 115 | - | - | |
Cma19g00704 | 564 | Pfam | bZIP transcription factor | 420 | 474 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00704 | 564 | MobiDBLite | consensus disorder prediction | 222 | 249 | - | - | |
Cma19g00704 | 564 | Coils | Coil | 499 | 519 | - | - | |
Cma19g00704 | 564 | CDD | bZIP_plant_RF2 | 421 | 470 | IPR044759 | GO:0003700|GO:0006355 | |
Cma19g00704 | 564 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 76 | 564 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01065 | Cma-Chr11:5839114 | Cma19g00704 | Cma-Chr19:7204892 | 0 | dispersed | |
Cma19g00704 | Cma-Chr19:7204892 | Cma20g00307 | Cma-Chr20:1509757 | 8.23E-52 | dispersed | |
Cma19g00702 | Cma-Chr19:7197762 | Cma19g00704 | Cma-Chr19:7204892 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36909 | PF00170 | bZIP_1 | 9.20E-09 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00704 | - | - | cpep:111776417 | 965.296 |