Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00705 ATGGAAGACTCAGTTTCGGCTGAGCTCCGGGACCCCACGGCGGTTTCCGAGGAGCCGGCTTCTCTGTCGGCCTCAACCGGAGCTCAGTTGACGCCTGAAGAATTGGTGGCCAAGGCCATAGCTCCTGTTAAGCGCGAGTATCTTCGTCCTCCGCCGGTGAGGTCCTCCTGTAACAACGTGAAGGATGCTGCTTCCACTGGTAAGAATGATGGTGATGATAAGGCTGCTCCGTCTAGCTTGGTGAAGGAGAAGAAGTCCAAACGTCAAATGAAACGAGAACGCCGTCAGGAACAGAAGTCCACTAGCCACTTATGTCCTGAAATAGCAAAGACAGGAGATGTTAGCTCATGTCGGTATAGTGATAAATGCCGCTTTAGCCATGATATTGAAGCCTTTAAATCTCAGAAACCAGCAGATCTCGATGGAGAGTGTCCCTTCAGTGGTGCCGAACAACTTTGCCCCTACGGTTTAGCGTGTAGATTTGCAGGTACCCACAAGGAAGGTGTTCCTGCTGGTTCGTCAGTTACCTTGAAGAAATGCTCCGAAATGAATGGACTGAATAAAGATGTTCAGAAGCTCTTATGGAAGAACAAGATGAAATTTCCAAAAGCTGATGCCAAACTCAAAGAACTTGGGCTCTTGGGGCATGGAAAGTCAAAATCGAGGGTCAAAGAAGAGAAGGAAGATGCTGTATCAAATGATAGTGTTGCAGACAGAACATGCTGTAGCGAAGTGAATAATGACATGGATGCGGACTTAGATATCCCTTTGGAAGTTCCAGAAGAAAATGGGCAGACCGAAGGAACATTTTCATCTGATGAATCTCGACCCCTGAAGAAACCGAAATCTATGTCTTCAGAGAACTGTCATTCTGATGAAATTGACAATGGTGGTGCATGTATGATTGATGCAACTATTAGAGAGGGCCACACACCAATTGAGTCTGAAGTTGTGAACGACAGTGTACTTCCTGATAGTGATGCAAGCCTTAAATCACATCCCCGCGAAAAAAAACTTATTGATTTTAGAGATAAGCTGTATCTTGCCCCTCTGACCACTGTTGGGAATCTTCCCTTCAGAAGAGTTTGCAAAGTTTTAGGAGCAGATGTGACATGCGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGTTGAGACGACATTCCTCAGAAGATCTATTTGGTGTTCAGATATGCGGTGCATATCCAGACACAGTATCACGTGCTGTAGAACTTATAGACAAAGAATGCGTGATCGACTTCATTGACATAAACATGGGATGCCCAATTGACATTGTTGTCAATAAGGGTGCTGGATCAGCTCTTCTTATGAAGCCAATGCGTATGAAAAGTGTAGTAGAAATCGCTTCCGGAATTGTGGATACGCCCATAACAATTAAGGTTCGGACAGGCTACTTTGAAGGGAAAAACCGTATCGATTCACTTATTGCAGACATTGGTAACTGGGGAGCCGGTGCTGTAACCATTCATGGCCGTACTCGCCAGCAACGTTACAGCAAGCTTGCTGACTGGGAATACATTAATCGCTGTTCCTCGTTAGCTCCTGATTCCCTGCAAGTTATAGGAAATGGGGACGTATTTTCATATGCAGAATGGAATCGACATAAAGTTGAATCCCCAAAGTTAGCTACTTGCATGATTGCTAGAGGAGCATTAATTAAGCCATGGTTATTTACTGAAATTAAGGAACAGAGAAATTGGGACATTACTTCAGGGGAGCGGCTAAACATCTTGAAGGATTTTGTACATTTTGGACTTGAACATTGGGGTTCCGACACAAAAGGTGTTGAGACGACAAGGCATTTCTTACTGGAATGGCTTAGCTACACATGTAGATATATTCCCGTTGGTCTTCTGGATGTTGTTCCCCAACGTTTGAACTGGCGCCCACCGTCATATTTTGGCCGTGACGACCTCGAGACGCTCATGTCCTCCGACTCTGCAGCTGACTGGATTAAGATCTCAGAGATGTTGCTCGGTAAAGTTCCCGATGGCTTCTCGTTCGCACCCAAACATAAGTCCAACGCCTACGACCGAGCCGAAAATGGCTGA 2094 45.51 MEDSVSAELRDPTAVSEEPASLSASTGAQLTPEELVAKAIAPVKREYLRPPPVRSSCNNVKDAASTGKNDGDDKAAPSSLVKEKKSKRQMKRERRQEQKSTSHLCPEIAKTGDVSSCRYSDKCRFSHDIEAFKSQKPADLDGECPFSGAEQLCPYGLACRFAGTHKEGVPAGSSVTLKKCSEMNGLNKDVQKLLWKNKMKFPKADAKLKELGLLGHGKSKSRVKEEKEDAVSNDSVADRTCCSEVNNDMDADLDIPLEVPEENGQTEGTFSSDESRPLKKPKSMSSENCHSDEIDNGGACMIDATIREGHTPIESEVVNDSVLPDSDASLKSHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVSRAVELIDKECVIDFIDINMGCPIDIVVNKGAGSALLMKPMRMKSVVEIASGIVDTPITIKVRTGYFEGKNRIDSLIADIGNWGAGAVTIHGRTRQQRYSKLADWEYINRCSSLAPDSLQVIGNGDVFSYAEWNRHKVESPKLATCMIARGALIKPWLFTEIKEQRNWDITSGERLNILKDFVHFGLEHWGSDTKGVETTRHFLLEWLSYTCRYIPVGLLDVVPQRLNWRPPSYFGRDDLETLMSSDSAADWIKISEMLLGKVPDGFSFAPKHKSNAYDRAENG 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7209539 7214983 + CmaCh19G007050.1 Cma19g00705 315393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00705 697 Gene3D - 94 173 - -
Cma19g00705 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 39 697 - -
Cma19g00705 697 MobiDBLite consensus disorder prediction 260 290 - -
Cma19g00705 697 Pfam CCCH-type zinc finger 103 128 IPR041367 -
Cma19g00705 697 MobiDBLite consensus disorder prediction 273 289 - -
Cma19g00705 697 Pfam Dihydrouridine synthase (Dus) 348 615 IPR035587 -
Cma19g00705 697 ProSitePatterns Uncharacterized protein family UPF0034 signature. 429 447 IPR018517 GO:0008033|GO:0017150|GO:0050660
Cma19g00705 697 Gene3D Aldolase class I 341 583 IPR013785 -
Cma19g00705 697 CDD DUS_like_FMN 345 579 IPR035587 -
Cma19g00705 697 MobiDBLite consensus disorder prediction 1 105 - -
Cma19g00705 697 ProSiteProfiles Zinc finger C3H1-type profile. 99 130 IPR000571 GO:0046872
Cma19g00705 697 SUPERFAMILY FMN-linked oxidoreductases 345 658 - -
Cma19g00705 697 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 39 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00705 K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89] - csv:101215945 1261.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00705 Cma-Chr19:7209539 Cma02g00488 Cma-Chr2:2579015 3.11E-13 transposed
Cma19g00705 Cma-Chr19:7209539 Cma20g00967 Cma-Chr20:4894863 3.12E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g58 . . . . . . . . Cmo19g00714 . . . . . Sed05g2278 . Cpe15g00570 Bhi05g01772 Tan02g0739 Cmetu01g1464 . Hepe02g0458 . . Cla02g00473 Cam02g0479 Cec02g0481 Cco02g0486 Clacu02g0483 Cmu02g0478 Cre02g0813 Cone12ag1198 . . . . Csa07g00053 . Cme01g01317 Blo04g00545 . . Bda14g00584 Bpe15g00836 . Bma03g00578 . . . . . Cma19g00705 . Car19g00544 . . . . . . . . . . . . . . . . Lsi11g01152 . Chy01g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011659 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36910 PF01207 Dus 5.70E-48 CL0036 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00705 Cma_Chr19 FPKM 7.849354 10.39188 7.355915 8.2137 15.426471 16.007214 15.136609 19.581793 17.113689 17.756369