Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00707 ATGTCCACCGGAATCGTTAAATCCAACAACATCCGCCGCATCGTCAGTATCCGCCAGATGCTGCAGCGGTGGCGGAGGAAAGCTCGCGTCACCGCCTCTTCTCGCTCCGCCGGTGATACTCCGTCGGATGTTCCGGCCGGCCATGTCGCCGTCTGCGTCGGAAGTAGTTGTCGACGGTTCGTTGTTCGAGCGACGTACTTGAACCATCCGATCTTCAAGAAGCTTCTCTTGCAAGCCGAAGAAGAGTACGGATTCGCGAACCAAGGTCCTCTTGCGATTCCTTGTGACGAGTCGGTTTTCGAAGAGGTTCTTCGGACCGTTTCCCGGTCCGAGTCTGGTCGGTTCTTGAATCTCCCGGATTTTTGCCGCCGCTGCCACGTCGACTCCCCGACTAGTCTCCTCCGTGAATCTCGGCCGTTGCTTTTTGACTTCGCCGATAAATCAGTCTGCTAG 453 56.51 MSTGIVKSNNIRRIVSIRQMLQRWRRKARVTASSRSAGDTPSDVPAGHVAVCVGSSCRRFVVRATYLNHPIFKKLLLQAEEEYGFANQGPLAIPCDESVFEEVLRTVSRSESGRFLNLPDFCRRCHVDSPTSLLRESRPLLFDFADKSVC 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7228844 7229296 + CmaCh19G007070.1 Cma19g00707 315395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00707 150 Pfam Auxin responsive protein 18 106 IPR003676 GO:0009733
Cma19g00707 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 143 IPR003676 GO:0009733
Cma19g00707 150 PANTHER SMALL AUXIN-UP RNA-RELATED 7 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00707 K14488 SAUR; SAUR family protein - csv:101203091 271.552
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00707 Cma20g00800 CCT
Cma02g00356 Cma19g00707 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01962 Cma-Chr1:12666544 Cma19g00707 Cma-Chr19:7228844 4.66E-64 dispersed
Cma02g00356 Cma-Chr2:1739187 Cma19g00707 Cma-Chr19:7228844 2.93E-62 dispersed
Cma09g00114 Cma-Chr9:506893 Cma19g00707 Cma-Chr19:7228844 8.45E-65 dispersed
Cma09g00543 Cma-Chr9:2431918 Cma19g00707 Cma-Chr19:7228844 6.78E-21 dispersed
Cma17g00621 Cma-Chr17:5294709 Cma19g00707 Cma-Chr19:7228844 1.09E-27 dispersed
Cma19g00707 Cma-Chr19:7228844 Cma01g01964 Cma-Chr1:12681845 1.27E-19 dispersed
Cma19g00707 Cma-Chr19:7228844 Cma02g00355 Cma-Chr2:1731959 7.94E-20 wgd
Cma19g00707 Cma-Chr19:7228844 Cma20g00800 Cma-Chr20:3759823 8.08E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g62 . . . . . Bpe12g00100 . . Cmo19g00716 . Cma02g00356 Cma20g00800 Car02g00223 Car20g00684 Sed05g2274 . . Bhi05g01769 Tan02g0737 Cmetu01g1255 . Hepe02g0456 . . Cla02g00471 Cam02g0478 Cec02g0479 Cco02g0485 Clacu02g0482 Cmu02g0477 Cre02g0810 . . . . Lsi10g00427 Csa07g00056 Chy11g00325 Cme01g01314 . . Bda15g01059 Bda14g00585 Bpe15g00835 . Bma03g00579 Bma08g00775 Sed01g0250 Cmo02g00358 Cmo20g00808 . Cma19g00707 . Car19g00545 Cpe16g00283 Cpe05g01300 Bhi10g01927 Tan05g1225 Cmetu11g1460 . Hepe08g0962 . . . . . . . . . Lsi11g01154 Csa02g01321 Chy01g00725 Cme11g00450
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000731 6 3 1 4 4 3 5 2 2 3 3 3 5 3 3 5 3 0 4 3 3 3 3 3 3 3 3 6 3 1 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00707 Cma_Chr19 FPKM 3.862031 4.12564 6.078562 5.079944 1.264732 1.181853 0.835443 3.310315 2.991805 3.184839
Cma19g00707 Cma_Chr00 FPKM 3.862031 4.12564 6.078562 5.079944 1.264732 1.181853 0.835443 3.310315 2.991805 3.184839