Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00712 ATGGGTTTCCGTCTGCCTAGAATTGTTAGTACTAAGCAAAGTCTTCAGCGATCTTCATCGACAGGGAACGGAGCATCTCCAAAGGCTGTCGATGTTCCTAAGGGCTACTTTACAGTTTATGTTGGTGAAGCACAAAAGAAGCGTTTTGTCATTCCACTATCTTACTTGAACCAGCCTTCTTTCCAAGATTTGTTGAGTCAAGCAGAGGAAGAATTTGGATATAATCATCCAATGGGTGGCATTACAATTCCTTGCAGTGAATACGATTTCCTCGATCTCACTCGGAATTTGAATGACTCATGA 303 41.91 MGFRLPRIVSTKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCSEYDFLDLTRNLNDS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7257222 7257524 - CmaCh19G007120.1 Cma19g00712 315400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00712 100 MobiDBLite consensus disorder prediction 1 30 - -
Cma19g00712 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 96 IPR003676 GO:0009733
Cma19g00712 100 PANTHER - 11 96 - -
Cma19g00712 100 Pfam Auxin responsive protein 17 95 IPR003676 GO:0009733
Cma19g00712 100 MobiDBLite consensus disorder prediction 9 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00712 K14488 SAUR; SAUR family protein - csv:105436056 187.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01409 Cma-Chr11:9259371 Cma19g00712 Cma-Chr19:7257222 9.39E-62 dispersed
Cma11g01410 Cma-Chr11:9264102 Cma19g00712 Cma-Chr19:7257222 1.16E-50 dispersed
Cma19g00712 Cma-Chr19:7257222 Cma19g00717 Cma-Chr19:7280039 1.85E-38 dispersed
Cma19g00711 Cma-Chr19:7254417 Cma19g00712 Cma-Chr19:7257222 4.08E-66 tandem
Cma19g00712 Cma-Chr19:7257222 Cma19g00713 Cma-Chr19:7259519 1.33E-35 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g77 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00587 . . . . . Cma19g00712 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00712 Cma_Chr19 FPKM 0.0 0.0 0.608563 0.960855 4.753207 3.533858 3.626533 0.0 0.0 0.0