Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00726 ATGACGATTTCGGAGAACACGAAGGGTCTGGTTCTGGCTATGGCGTCGAGTGCGTTTATTGGTTCGAGTTTTATCTTGAAGAAGAAGGGACTCAAGCGTGCCGGAGCCACAGGGGTGAGAGCAGGTGTTGGTGGATATACATACCTGTTAGAGCCACTTTGGTGGGCAGGAATGGTCACAAGATCAGTTATAATAGTTATCCATGCACCTCAGGAACATACTCCTGATTCTGTACAAGAAATTTGGGATTTAGCTACCCAACCAGCTTTTCTAGTCTACATTGCTACTATAGCTTTGTTAGTATTGGCTCTCATGTTGTATTTTGAGCCTCGCTATGGGCATGTAAACATACTGGTCTACTTGGGAATCTGTTCTTTAATGGGTTCATTGACGGTTATGAGTATTAAAGCTATTGGAATAGCGATAAGGCTTACACTTGAAGGGGTAAGCCAGGACTGGTCAGGCCAGAATGCAAACACCATAGTTTCTGAATTATGTGGATTCATTACTGTCCTTTCTGGAACTATTATTCTTCATTCAACCAGAGAACAACAACCAGTCTCCTCACAAGAACTTCCATTGAAGCTCCAACTTCTCACTTCCATGGCCTGCTCCTCCTGGCTTCTGATTATTGTGGCCTTTTGTTTGACGGTGCCACGTTCGGCAGCTGTTCGAGGATTTTCGATCAGAGAAGCCACAGTACCTGACCTCCATCTAGCTTTCAAGCGAAACGAGCTCACGTCGAGGGGCCTTGTCGAGTTCTACATCGGAGAAATTCGCAGACTCAACCCGGTTGTCCATGGTGTCATAGAAATCAACCCAGATGCCTTGCTGCAAGCTTACAAGGCTGACAGAGAGCGTGAGGCTAAGAAGCCTGGATCGCTTTGTGGGCTGCATGGAATCCCAGTTTTATTGAAGGATAGCATTGGGACTAAGGATAAGTTGAACACTACTGCTGGATCGTTCGCGTTGCTTGGCTCTATCGTGCCCCGTGATGCAGGCGTGGTGAAGAGACTAAGAAGGGCTGGAGCCATCATACTGGGAAAGGCTAGCTTGAGTGAATGGGCTGACTTTAGCAGTGGACCCTCCATATCAGTTGCAGCAAACATAGCAGCAGTGTCAATAGGAACTGAAACGGACGGCTCTATCCTCTGTCCAGCTAGTTTTAACTCAGTCGTCGGCATCAAACCGACCGTCGGCCTCACCAGTAGAGCAGGTGTCATTCCAGTCTCCCCAAGACAAGACACTATTGGGCCAATCGGCAGGACAGTGACTGATGCTGTAATAGTTCTTGACACCATTGTAGGATTTGATTACAATGATGCAGCCACCAGAACATCCTCCAAGTATATTCCATACGGTGGCTACAAACAATTCCTCAATGCAAATGGGTTGAAAGGGAAACGATTGGGCATTGTTAGGAACCCTTTTTTCAGCTTCTTCAATGATTCAGCCATCACTCAAGCTTTTGAGGATCATTTCAACATTCTAAAGCAAGGTGGTGCAGTTTTGGTAGACAACCTAGAGATAGCAAATATAGATATCATCTTAAACGTGACTGCAAGTGGAGAAGCAGCGGCATTGCTAGCAGAATTCAAACAATCATTGAATGAGTACCTGAAAGAGCTGGTGGCTTCCCCTGTTCGAAGTTTGGCCGACATAATCGCCTTCGATAACGCAAATCCAGATCAGGAACTGCTCGACGTTTTCGGCCAGGAGATTTTTCTCGCGGCCGAAGCCACAAATGGGATCGGCGACGTGCAGAAGGCGGCTCTGTTGAACTTGGCGAAGCTGACGAAGGATGGGTTCGAGAAAGTGGTGGAGGAGGAGCGATTGGATGCGGTGGTGACGCCAGGTCCCGCCATAGCTACGGTGCTTGCAATTGGGGGATTTCCGGGAATCAATGTTCCGGCGGGGTACGACGGCGGAGGAGTTCCATTTGGGATTAACTTTGGAGGGTTGAAGGGTTCAGAGCCGAAGCTGATTGAGGTTGCTTATGCGTTCGAGCAGGCCACTCTGATAAGAAAGCCTCCTTCCTTCAAGCCTTGA 2049 47.93 MTISENTKGLVLAMASSAFIGSSFILKKKGLKRAGATGVRAGVGGYTYLLEPLWWAGMVTRSVIIVIHAPQEHTPDSVQEIWDLATQPAFLVYIATIALLVLALMLYFEPRYGHVNILVYLGICSLMGSLTVMSIKAIGIAIRLTLEGVSQDWSGQNANTIVSELCGFITVLSGTIILHSTREQQPVSSQELPLKLQLLTSMACSSWLLIIVAFCLTVPRSAAVRGFSIREATVPDLHLAFKRNELTSRGLVEFYIGEIRRLNPVVHGVIEINPDALLQAYKADREREAKKPGSLCGLHGIPVLLKDSIGTKDKLNTTAGSFALLGSIVPRDAGVVKRLRRAGAIILGKASLSEWADFSSGPSISVAANIAAVSIGTETDGSILCPASFNSVVGIKPTVGLTSRAGVIPVSPRQDTIGPIGRTVTDAVIVLDTIVGFDYNDAATRTSSKYIPYGGYKQFLNANGLKGKRLGIVRNPFFSFFNDSAITQAFEDHFNILKQGGAVLVDNLEIANIDIILNVTASGEAAALLAEFKQSLNEYLKELVASPVRSLADIIAFDNANPDQELLDVFGQEIFLAAEATNGIGDVQKAALLNLAKLTKDGFEKVVEEERLDAVVTPGPAIATVLAIGGFPGINVPAGYDGGGVPFGINFGGLKGSEPKLIEVAYAFEQATLIRKPPSFKP 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7325682 7333957 + CmaCh19G007260.1 Cma19g00726 315414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00726 682 SUPERFAMILY Amidase signature (AS) enzymes 228 679 IPR036928 -
Cma19g00726 682 PANTHER AMIDASE 359 682 - -
Cma19g00726 682 PANTHER AMIDASE 222 359 - -
Cma19g00726 682 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 359 682 - -
Cma19g00726 682 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 222 359 - -
Cma19g00726 682 Gene3D Amidase signature (AS) domain 217 680 IPR036928 -
Cma19g00726 682 Pfam Amidase 251 360 IPR023631 -
Cma19g00726 682 Pfam Amidase 359 620 IPR023631 -
Cma19g00726 682 Pfam Magnesium transporter NIPA 62 151 IPR008521 GO:0015095|GO:0015693|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00726 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101204792 815.839
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00726 Cma-Chr19:7325682 Cma01g00941 Cma-Chr1:5965176 5.62E-11 dispersed
Cma11g01390 Cma-Chr11:9161690 Cma19g00726 Cma-Chr19:7325682 2.30E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma19g00726 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00726 Cma_Chr19 FPKM 1.74856 1.538957 1.01269 0.985136 1.627704 1.035154 1.640585 0.407253 0.0 0.441034