Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00728 ATGGAAAATGGGGTTAAGATTGCTCATGGCTTGGACGATGGAGAGAAGAAATTTGGGGAAGATGGTGTTTCATCGTATTGTGTAGATGAAACAGTTGTACTTGGTGCTCACGAATCTAGGGATTTGGAAGGGGAAGATGTTTTTGAGGAGGCTTTAGATGGGAAAGAGCATTTACTAGAGCAGAGTCCGAGATATGGTTCGGTGAATGGTGATGTTGGAGAAGAAGAAGTCAATGATTTTGTATCTGCAGTAATTTTGGACCGCCCTAGTAGTGTGCACGATGAAGAGAAGTTTGAAGAGGCAATGGAGGCTTCTAGTGGGGTCGATGAAAACACGGTGGTGGATGAGCAAGATGTGAATTCTGAAAAGGAGAAGGAAGACTTGGGCGAGAAATTGTTCGACAATGTAGTTGTGGCTTCTAAGATTGATGAAAGAGGAATTGAAGAGGAAGCAGTGACCTCTGAGTTGAATGAGAGGAAGGATAATGAGTTGGACTGCGGTAGAGATGATTTGAGAAAGGAGACATTGGAGAACGGTGCTAGCCCGGAGGTTGAAGTGCTGAAGGGTGGGGATGAGGATGATTTGAAATACGGTTTGTCGAGTATGAAGTCAGAAAAGGAAAATAGTGACGTTTTGCATGTGACTCCACCTTCGGATGATGAACGGGTGAAGACTGCCGATATGGTTGGTGGGACTAACCTGAATTCTTCCAGTGAGATTCTGACTGAAAACAGCGAAGGCATAGAATTGGATGAGAAAAGCTTAGTTACAGAGTCTAGAGATCATGTTGAGAACACCGAGAAGCCATTAGTTGCACCCACTGTCCTTGATTTGGACAATCAAGATTATGTGAATTCTGAGCTAAGGGATGATTCTCCTCATGTTGATCTAGAACTGCCTGACAATGAGAGTGAAGAAATAAAAATGGCTGCAACTGGTATCGATCCTAAGAACGATGATAATAAAGATGAAGGAAGCTCTGAGGAAGTGCAAGATGCTTCTACTGGGAAAGACACAGAAGTGCAGTTGAGAGAATCTCGGGGTTTGAATGGTACTACTTCTGTTGATCAACATGAACCTGTGGGTGAAAATCGAATTTCTCTGGAGACGGTTAAGGATATCTCAGCTTCTGAAAAGATAGCAGATGAGAAAATTGAGAAGACCCAGGGTGGTGAAAGTGATGTGACTGTGAAGGAAGATAATACATTAAGACAACAGCATCCTGTCGATAGTTCCAATAATGGCCTCGACACGGGAGGGCTTGAAAAGACAGAGAGTAAAGATAAGGTTGGACAGGACAGAACCCAAGTGAAAAGGGATCCAGAGATTCAACCTTCATCAATCATTGCTTCATCATCTGGAAAATCTACAAATCCCACTCCTCCTGCCCATCCAGCTGGTCTTGGGCGGGCTGCTCCATTGTTGGAACCTGCCCCTCGGGTGGTGCAGCCACCTCGAGTAAACGGTACTGTATCTCATGTTCAATTGCAACAAATTGATGATCATGTTAATGGGGATGCTGAGGAAAATGACGATACTCGTGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGGCTTGGGCAAACTCCACACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGTGCCTTCAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAACTGGAGGCTTCTGGGCAGGAACCGCTTGATTTCTCTTGTACGATCATGGTTCTTGGAAAGACAGGTGTGGGTAAAAGCGCTACCATCAACTCCATATTTGATGAAGTTAAATTCAGTACTGATGCTTTTCAAATGGGCACAAAAAAGGTTCAAGATGTTGTGGGAACTGTGCAGGGGATCAAAGTACGGGTCATCGACACTCCTGGCCTTCTTACCTCTTGGTCAGACCAGCGCCAGAATGAGAAGATCCTTCTCTCTGTTAAAAATTTTATAAAGAAGACGCCTCCAGATATTGTTTTGTATCTTGATAGGCTGGACATGCAAAGCCGAGATTTCAGTGACATGCCTCTCTTGCGTACAATTACTGAAATATTTGGACCATCTATATGGTTCAATGCAATTGTAGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGCACTGCTTCTAGTTACGATATGTTCGTTACTCAGCGATCTCATGTTGTACAGCAAGCCATACGCCAGGCTGCAGGGGATATGCGTCTTATGAACCCCGTCTCATTAGTGGAGAATCACTCTGCTTGTAGAACGAACAGAGCTGGGCAAAGGGTATTGCCAAATGGCCAGGTTTGGAAACCTCATTTGTTATTGCTCTCTTTTGCCTCGAAGATTTTGGCCGAAGCTAACACTCTTCTGAAGTTGCAAGATAGTCCACCTGGGAGGCCATTTACTCCTCGGTCGAAGTCACCTCCTTTACCGTTCCTTCTTTCTTCCCTTCTTCAATCCAGACCTCAAGTGAAACTGCCAGAGGAACAATTTGCTGATGATGATGGTCTTGAGGATGACCTTGATGAATCGTCAGATTCTGAAAATGAATCTGAATATGATGAATTGCCACCTTTTAAACGATTGAAAAAAGCACAGGTGGAGAAGCTCTCCAAAGAACAGAAGAAGGCCTACTTTGATGAGTTGGAATACAGGGAAAAACTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAATGAGGAGGAAGATGTTGAAGAAAATGGCTGCCGAGGCAAAAGATCGACCTAGCAACTCTAGTGATAATGTAGAAGAAGATAGTGGTGCTGCTGCATCAGTACCAGTTCCCATGCCTGATTTGGCGTTACCTGCTTCCTTTGATTCTGATAATCCCACTCACCGGTATCGTTATCTCGATTCCTCTAACCAATGGCTAATAAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTCGTCGTCAAAGACACAATACCCATCTCTTTTAGTGGTCAAGTTACCAAGGATAAGAAGGATGCAAATGTTCAAATCGAGATGAGTAGTACGATAAAGCATGGCGAAACTAAAGCGTCTTCTGTCGGTTTTGATATGCAGACCGTTGGGAAGGATTTGGCCTATACATTACGTGGTGAGACAACATTTATTAATTTTAGGAAGAACAAGGCAATTGCTGGTCTGTCATTTGCCCTATTAGGCGATGCCTTGTCTGCAGGATTCAAAGTTGAAGATAAATTGATTGCTAATAAGCGATTTCGTTTAGTTGTGACTGGGGGTGCAATGACTGGTAGGGGAGATGTAGCTTATGGTGGCAGCCTGGAGGCTCAATTGAGAGATAAAGATTATCCGTTGGGTCGTTCCCTTTCGACTCTTGGGCTATCGATTATGGATTGGCATGGAGATCTTGCTATTGGTTGCAACATACAATCTCAAGTTCCCATTGGACGATCGACAAACCTGATTGCTCGTATGAATTTGAATAACAGGGGGGCAGGGCAAGTCAGCGTTCGGTTAAACAGCTCGGAACAGCTTCAGTTAGCTCTTGTTGGTCTCCTTCCTCTATTCAGAAAGCTTCTGGGTTGTTATCAACACTGGCAGGATGAACAATGA 3660 44.07 MENGVKIAHGLDDGEKKFGEDGVSSYCVDETVVLGAHESRDLEGEDVFEEALDGKEHLLEQSPRYGSVNGDVGEEEVNDFVSAVILDRPSSVHDEEKFEEAMEASSGVDENTVVDEQDVNSEKEKEDLGEKLFDNVVVASKIDERGIEEEAVTSELNERKDNELDCGRDDLRKETLENGASPEVEVLKGGDEDDLKYGLSSMKSEKENSDVLHVTPPSDDERVKTADMVGGTNLNSSSEILTENSEGIELDEKSLVTESRDHVENTEKPLVAPTVLDLDNQDYVNSELRDDSPHVDLELPDNESEEIKMAATGIDPKNDDNKDEGSSEEVQDASTGKDTEVQLRESRGLNGTTSVDQHEPVGENRISLETVKDISASEKIADEKIEKTQGGESDVTVKEDNTLRQQHPVDSSNNGLDTGGLEKTESKDKVGQDRTQVKRDPEIQPSSIIASSSGKSTNPTPPAHPAGLGRAAPLLEPAPRVVQPPRVNGTVSHVQLQQIDDHVNGDAEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEASGQEPLDFSCTIMVLGKTGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLTSWSDQRQNEKILLSVKNFIKKTPPDIVLYLDRLDMQSRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFTPRSKSPPLPFLLSSLLQSRPQVKLPEEQFADDDGLEDDLDESSDSENESEYDELPPFKRLKKAQVEKLSKEQKKAYFDELEYREKLFMKKQLKEEKMRRKMLKKMAAEAKDRPSNSSDNVEEDSGAAASVPVPMPDLALPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQIEMSSTIKHGETKASSVGFDMQTVGKDLAYTLRGETTFINFRKNKAIAGLSFALLGDALSAGFKVEDKLIANKRFRLVVTGGAMTGRGDVAYGGSLEAQLRDKDYPLGRSLSTLGLSIMDWHGDLAIGCNIQSQVPIGRSTNLIARMNLNNRGAGQVSVRLNSSEQLQLALVGLLPLFRKLLGCYQHWQDEQ 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7336324 7339983 - CmaCh19G007280.1 Cma19g00728 315416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00728 1219 MobiDBLite consensus disorder prediction 246 267 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 846 866 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 283 344 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 201 226 - -
Cma19g00728 1219 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 377 1211 IPR045058 -
Cma19g00728 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 722 IPR027417 -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 229 244 - -
Cma19g00728 1219 CDD Toc34_like 560 805 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 842 873 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 375 405 - -
Cma19g00728 1219 PANTHER TRANSLOCASE OF CHLOROPLAST 120, CHLOROPLASTIC-LIKE 377 1211 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 421 440 - -
Cma19g00728 1219 Gene3D - 557 805 IPR027417 -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 922 946 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 1 20 - -
Cma19g00728 1219 ProSiteProfiles AIG1-type G domain profile. 585 814 IPR006703 GO:0005525
Cma19g00728 1219 MobiDBLite consensus disorder prediction 406 420 - -
Cma19g00728 1219 Pfam AIG1 family 588 721 IPR006703 GO:0005525
Cma19g00728 1219 Coils Coil 908 928 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 345 360 - -
Cma19g00728 1219 MobiDBLite consensus disorder prediction 441 460 - -
Cma19g00728 1219 TIGRFAM 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains 465 1212 IPR005690 GO:0003924|GO:0005525|GO:0009707|GO:0045036
Cma19g00728 1219 MobiDBLite consensus disorder prediction 201 471 - -
Cma19g00728 1219 Pfam Translocase of chloroplast 159/132, membrane anchor domain 946 1209 IPR024283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00728 - - - cmo:103490300 1935.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01385 Cma19g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00318 Cma-Chr1:1530004 Cma19g00728 Cma-Chr19:7336324 0 dispersed
Cma11g01385 Cma-Chr11:9127841 Cma19g00728 Cma-Chr19:7336324 0 dispersed
Cma16g01238 Cma-Chr16:9365290 Cma19g00728 Cma-Chr19:7336324 2.62E-35 dispersed
Cma19g00728 Cma-Chr19:7336324 Cma14g00895 Cma-Chr14:4630002 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00728 Cma_Chr19 FPKM 23.909153 25.113958 36.532379 39.354561 27.932671 27.31455 28.117329 41.932934 37.03442 37.195362