Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00735 ATGGGGTTTTTCGGTACTATATTGGGTTTTTTTGGATTTGGAGTCGGCATCTCCATCGGCCTTGTTGCTGGTTACTTCCTTTTCATCTATGTTCAACCTAATAATGTTGAGGATCCTGAGATTCGACCGCTTGTCGAAGAGGACACAATAAGATTGCAGCAAATGCTTCCTGAGATCCCACTTTGGGTGAAATGTCCAGATTATGATCGTGTTGACTGGCTTAACAGGCTTATTCAATATATGTGGCCTTATCTTGATAAGGCGATATGCAAAACAGTAAGAGATATTGCTAAACCTATTATTGCAGAGCAAATTCCTAAATTTAAGATCGATTCCGTTGATTTCGAAGCACTCACATTGGGGTCCTTGCCGCCGACGTTTCAAGGCATGAAAGTGTACGTTACTGATGAGAAGGAGCTGATATTGGAACCTTCAATAAAATGGGCTGGAAATCCAAATGTCCTGATAGCAATCAAGGCATTTGGACTGAAAGCAACAGTTCAGGTTTTAGATTTGCAAGTTTTTGCAGCCCCACGTATTACCTTGAAGCCATTGGTTCCAAGCTTTCCTTGTTTTGCAAATATCTTCGTCTCGCTCATGGAAAAGCCACACGTTGATTTTGGCCTAAAACTTGTTGGGGCTGACTTAATGTCAATTCCAGGTCTCCACCACTTTGTCCAGGAGACCATTAAAGATCAGGTTGGCAACTTGTATCTATGGCCTAAAACCTTGGATATAGCAGTCATGGATCCATCAACAGCGCTAAGGAAGCCGGTTGGTATCCTAGATGTGAAGGTTGTGAGGGCAATGAGACTAAAAAAGAAAGACCTTTTAGGTGCATCAGATCCTTATGTAAAGCTGCAGCTTACAGAGGAAAATCTACCTTCAAAAAAGACCACTGTGAAGCAAAAGAATTTGAATCCTGAATGGAATGAAGAGTTCAGTTTTGTGGTTAAAGATCCAAATTCCCAAGCCATAGAGTTCCAAGTTTTCGACTGGGAGCAGGTTGGAAAGCATGACAAAATGGGCATAAATCTAGTCCCTTTGAAAGAGCTTTATCCTGATGAGCCAAAAGTCTTCACGCTTGACCTGCTCAAGAACATGGACTTGAATGATGTTCAAAATGAGAAGAACAGGGGACAAATTGTGGTTGAGTTGACGTATAAACCATTCAAGGAAGATGATTTAGCTGGAGATTTTGATGATTCACAGAAGAAGGTAATGGATGCTCCTGCAGGAACGCCTGAAAATGGAGGTCTACTTGTAGTTATTGTTCATGAAGCTCAAGATGTTGAAGGCAAGCACCATAACAATCCATATGTGAGGCTTCTCTTCAAAGGAGAAGAGAAAAGAACCAAGCGTCTGAAGAAGAACAGAGACCCAAGATGGGAAGAAGAGTTTGAATTTATGCTGGAAGAACCACCCACAGATGACAAATTATATGTGGAAGTTCTCAGCTCTTCATCAAGAATGGGCCTCTTGCATCCCAAGGAATCATTGGGGTACGTGGAGGCGCGTGGCGGTTCATGGCCAAAGGATGAGCTTTGGAGGTCGCATTATCAAATTGGGAGCAGATTTTTGCGAAGTTCGAGGTATCCTCTCTACTGTACGAAGCAACGCCTTTCGTTTTTCTGCTCTGTAATGGCGTTACCGGTCGTAGATACAGAGTACCTTAAGGAGATCGATAAGGCTCGCCGTCACCTCCGCTCTCTCATTGCTAACCGGAACTGTGCACCGATCATGCTTCGTCTGGCTTGGCACGACGCTGGCACGTACGATGTGAGTACGAAAACTGGCGGGCCTAATGGTTCGATTAGGAACGCGGAGGAGTATTCTCACGGATCTAACAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTAAAGTATAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGCGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACTATTGACTTTGTTCCTGGTAGGAAGGATTCGAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCTAAAAAAGGTGCACCGCATCTGCGTGACATCTTTTATAGGATGGGTCTGTCTGACAAAGATATTGTTGCACTGTCTGGGGGTCACACTTTGGGAAGAGCACATCCGGAGAGATCTGGTTTCGATGGACCTTGGACAGAGGATCCTCTGAAGTTTGATAACTCATACTTTGTGGAACTGTTGAAAGGAGAATCAGAGGGACTATTAAAACTTCCTACGGACAAGGCCTTACTTGAAGATCCTGAATTCCGCCAATATGTGGAATTGTATGCAAAAGATGAAGATGTATTCTTTCAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGCTAAACCAATTGTGAAGGACAGCACAGTTTTGGCTCAGGGTGCCGTTGGAGCCGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTACTTATACGAAATCCACAAAAAATCGAAGTAA 2502 43.8 MGFFGTILGFFGFGVGISIGLVAGYFLFIYVQPNNVEDPEIRPLVEEDTIRLQQMLPEIPLWVKCPDYDRVDWLNRLIQYMWPYLDKAICKTVRDIAKPIIAEQIPKFKIDSVDFEALTLGSLPPTFQGMKVYVTDEKELILEPSIKWAGNPNVLIAIKAFGLKATVQVLDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLVGADLMSIPGLHHFVQETIKDQVGNLYLWPKTLDIAVMDPSTALRKPVGILDVKVVRAMRLKKKDLLGASDPYVKLQLTEENLPSKKTTVKQKNLNPEWNEEFSFVVKDPNSQAIEFQVFDWEQVGKHDKMGINLVPLKELYPDEPKVFTLDLLKNMDLNDVQNEKNRGQIVVELTYKPFKEDDLAGDFDDSQKKVMDAPAGTPENGGLLVVIVHEAQDVEGKHHNNPYVRLLFKGEEKRTKRLKKNRDPRWEEEFEFMLEEPPTDDKLYVEVLSSSSRMGLLHPKESLGYVEARGGSWPKDELWRSHYQIGSRFLRSSRYPLYCTKQRLSFFCSVMALPVVDTEYLKEIDKARRHLRSLIANRNCAPIMLRLAWHDAGTYDVSTKTGGPNGSIRNAEEYSHGSNNGLKKAIDFCEEVKYKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRQYVELYAKDEDVFFQDYAESHKKLSELGFTPGSAKPIVKDSTVLAQGAVGAAVAAAVVILSYLYEIHKKSK 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7366044 7377983 - CmaCh19G007350.1 Cma19g00735 315423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00735 833 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Cma19g00735 833 PRINTS C2 domain signature 304 317 IPR000008 -
Cma19g00735 833 PRINTS C2 domain signature 326 334 IPR000008 -
Cma19g00735 833 PRINTS C2 domain signature 277 289 IPR000008 -
Cma19g00735 833 CDD C2 262 364 - -
Cma19g00735 833 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Cma19g00735 833 Gene3D - 564 790 - -
Cma19g00735 833 CDD C2 421 504 - -
Cma19g00735 833 Pfam C2 domain 420 489 IPR000008 -
Cma19g00735 833 Pfam C2 domain 260 358 IPR000008 -
Cma19g00735 833 SUPERFAMILY Heme-dependent peroxidases 568 796 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 Gene3D C2 domain 256 410 IPR035892 -
Cma19g00735 833 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 504 IPR045050 GO:0008289
Cma19g00735 833 Gene3D C2 domain 420 508 IPR035892 -
Cma19g00735 833 CDD ascorbate_peroxidase 551 793 - -
Cma19g00735 833 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 419 525 IPR035892 -
Cma19g00735 833 SMART C2_3c 261 361 IPR000008 -
Cma19g00735 833 SMART C2_3c 420 512 IPR000008 -
Cma19g00735 833 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 392 IPR035892 -
Cma19g00735 833 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Cma19g00735 833 ProSitePatterns Peroxidases active site signature. 578 589 IPR019794 GO:0004601
Cma19g00735 833 ProSiteProfiles Plant heme peroxidase family profile. 578 807 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 Gene3D Peroxidase, domain 2 677 783 - -
Cma19g00735 833 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 504 - -
Cma19g00735 833 PRINTS Haem peroxidase superfamily signature 654 666 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Haem peroxidase superfamily signature 636 653 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Haem peroxidase superfamily signature 699 714 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Haem peroxidase superfamily signature 723 738 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Haem peroxidase superfamily signature 578 592 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 ProSiteProfiles C2 domain profile. 399 527 IPR000008 -
Cma19g00735 833 Pfam Peroxidase 567 771 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 767 791 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 557 577 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 675 692 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 715 739 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 635 653 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 654 666 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 578 593 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 596 606 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 610 634 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 PRINTS Plant ascorbate peroxidase signature 693 714 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cma19g00735 833 ProSitePatterns Peroxidases proximal heme-ligand signature. 699 709 IPR019793 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00735 - - - csv:101207181 914.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma19g00735 Cma20g00755 CCT
Cma19g00735 Cma20g00755 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00672 Cma-Chr3:5585762 Cma19g00735 Cma-Chr19:7366044 4.11E-136 dispersed
Cma05g00316 Cma-Chr5:1367244 Cma19g00735 Cma-Chr19:7366044 0 dispersed
Cma11g01390 Cma-Chr11:9161690 Cma19g00735 Cma-Chr19:7366044 4.23E-172 dispersed
Cma15g00669 Cma-Chr15:3192822 Cma19g00735 Cma-Chr19:7366044 7.19E-70 dispersed
Cma18g00672 Cma-Chr18:6211194 Cma19g00735 Cma-Chr19:7366044 1.21E-12 dispersed
Cma20g00453 Cma-Chr20:2164949 Cma19g00735 Cma-Chr19:7366044 3.03E-99 dispersed
Cma19g00735 Cma-Chr19:7366044 Cma20g00755 Cma-Chr20:3550894 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00735 Cma_Chr19 FPKM 3.605011 4.028921 18.424477 18.688929 31.614229 32.037277 29.957779 30.941084 30.701603 30.781628