Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00738 ATGGAGGACGGAGAGCTTGATTTTTCGAATCAGGAAGTGTTTTCGAGTCCAAATATGGAGATTCCGAGCAGTTGTTCAATGGATGGTTTCTTTGATGAACTTTTGAAGGACACTCATACTTGTACTCACACGCATACTTGCAATCCACCGGGCCCTGACTACTCTCATACTCACACATGTTTTCATGTCCACACTAAGATTGTCCCAGCTCCAAGTGAAGAAGACAAGGTTGTTACTGATGACACTGCGGAATCGACCGAGAAGAAGTCGAAGAAACGGCCGTTGGGTAACCGTGAAGCTGTTCGTAAGTACCGGGAGAAGAAGAAGGCTAGGGCAGCTTCATTAGAGGACGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGGTGAAGAGGTTGCAGGGGCAGGCAGCACTTGAGGCTGAGGTTGCTAGGCTTAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCTTTCCCATATCAGAAAGCTGTTAATCCTAACTTGGCTAATCCAAGCATCCCTGGTGCTTATTTGATGAACCCGTGTAATGTCCGGTGTGAGAATGATCAGATTTACTGCCTCCATCCAGGGGTCGATGGTAGCAGAAGCAGTGAAGGTGCTGTGATAAATGGACAGAGTTTTGGTGCTTGTGAATTTGAAAATCTTCAATGTTTGGCTAGTCATGGCTTGACATCGGAAGAGCTACCCGGGTGTGGACTACGGAATGCTGTCTCGAACGATATTTCTTCAGAAGCAATGAAGAAGAAAGGAGGAAAACGTAAAGAGACATGA 810 45.93 MEDGELDFSNQEVFSSPNMEIPSSCSMDGFFDELLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKIVPAPSEEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLVKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLANPSIPGAYLMNPCNVRCENDQIYCLHPGVDGSRSSEGAVINGQSFGACEFENLQCLASHGLTSEELPGCGLRNAVSNDISSEAMKKKGGKRKET 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7389350 7391822 + CmaCh19G007380.1 Cma19g00738 315426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00738 269 Coils Coil 98 132 - -
Cma19g00738 269 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 242 - -
Cma19g00738 269 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Cma19g00738 269 Gene3D - 75 153 - -
Cma19g00738 269 PANTHER BASIC LEUCINE ZIPPER 23 1 242 - -
Cma19g00738 269 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Cma19g00738 269 MobiDBLite consensus disorder prediction 71 97 - -
Cma19g00738 269 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700|GO:0006355
Cma19g00738 269 CDD bZIP 91 144 - -
Cma19g00738 269 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00738 Cma20g00750 CCT
Cma02g00259 Cma19g00738 CCT
Cma11g01382 Cma19g00738 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01382 Cma-Chr11:9117381 Cma19g00738 Cma-Chr19:7389350 3.50E-154 wgd
Cma19g00738 Cma-Chr19:7389350 Cma02g00259 Cma-Chr2:1176817 1.38E-136 wgd
Cma19g00738 Cma-Chr19:7389350 Cma20g00750 Cma-Chr20:3517913 8.09E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36913 PF07716 bZIP_2 7.60E-14 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00738 K25785 - csv:101208161 485.337