Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00740 ATGGGTGTTTTGGATCATTTGTCTGACTACTTTGATTGTTCTTCCCACAGCTCTAAGCACAAGAAACGCAAGCAATTGCAGACGGTGGAGCTGAAGATTCGGATCGACTGCGAAGGGTGTGAGAGGAAGGTGAGGAGAGCATTGGAAGGGATGAAGGGAGTGAAGCAGGTGGACGTGGACCGCAAGGCCAACAAAGCCACCGTTGTCGGATACGTCGAGCCATCCAAAGTGGTGGCGCGTGTCGCTCATCGGACTGGTAAGAAGGCGGAGCTATGGCCCTACGTGCCCTACGACGTCGTGGCACATCCTTACGCGCCGGGAGTGTATGACAAGAAGGCGCCGGCAGGGTACGTGCGGAAAGCTGACGATCCCAACGTGTACCAGCTGGCACGTGCGAGCTCCACGGAGGTTCGCTATACGACAGCGTTTAGTGACGAAAATCCCGCGGCTTGCGCTGTCATGTAA 465 55.91 MGVLDHLSDYFDCSSHSSKHKKRKQLQTVELKIRIDCEGCERKVRRALEGMKGVKQVDVDRKANKATVVGYVEPSKVVARVAHRTGKKAELWPYVPYDVVAHPYAPGVYDKKAPAGYVRKADDPNVYQLARASSTEVRYTTAFSDENPAACAVM 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7396497 7398136 - CmaCh19G007400.1 Cma19g00740 315428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00740 154 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 2 154 - -
Cma19g00740 154 CDD HMA 35 90 IPR006121 GO:0046872
Cma19g00740 154 SUPERFAMILY HMA, heavy metal-associated domain 27 93 IPR036163 GO:0046872
Cma19g00740 154 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 154 IPR045181 GO:0046872
Cma19g00740 154 Gene3D - 23 90 - -
Cma19g00740 154 Pfam Heavy-metal-associated domain 33 87 IPR006121 GO:0046872
Cma19g00740 154 ProSiteProfiles Heavy-metal-associated domain profile. 35 91 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00740 - - - csv:101208405 308.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01380 Cma19g00740 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00947 Cma-Chr15:5075320 Cma19g00740 Cma-Chr19:7396497 2.16E-53 dispersed
Cma18g00977 Cma-Chr18:8259127 Cma19g00740 Cma-Chr19:7396497 1.27E-49 dispersed
Cma07g00412 Cma-Chr7:1785172 Cma19g00740 Cma-Chr19:7396497 6.62E-68 transposed
Cma11g01380 Cma-Chr11:9111745 Cma19g00740 Cma-Chr19:7396497 1.67E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g164 . Blo15g00381 Bda06g00476 . . Bpe12g00122 . . Cmo19g00749 Cmo11g01741 . . . . Sed05g2215 Cpe04g00593 Cpe15g00594 Bhi05g01712 Tan02g0681 Cmetu01g1192 . Hepe02g0424 . . Cla02g00426 Cam02g0435 Cec02g0433 Cco02g0451 Clacu02g0436 Cmu02g0431 Cre02g0765 Cone12ag1233 Cone8ag1286 . . . Csa07g00101 . Cme01g01260 Blo04g00568 . Bda15g01033 Bda14g00616 Bpe15g00812 . . . . . . Cma11g01380 Cma19g00740 . Car19g00569 . . . . . . . . . . . . . . . . Lsi11g01201 . Chy01g00680 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005751 3 1 2 0 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00740 Cma_Chr19 FPKM 40.292465 38.414913 168.759933 161.645386 16.845335 21.060297 12.521491 28.290543 32.31086 25.767565